Variant report

Variant	rs2837465
Chromosome Location	chr21:41531207-41531208
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1011765	0.84[CHB][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs10211913	0.93[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs11911749	0.84[TSI][hapmap]
rs8132673	0.81[EUR][1000 genomes]
rs9983013	0.97[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2837465	B3GALT5	cis	cerebellum	SCAN
rs2837465	C2CD2	cis	cerebellum	SCAN
rs2837465	B3GALT5	cis	parietal	SCAN
rs2837465	ZNF295	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41525400-41534000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr21:41527400-41566400	Weak transcription	Fetal Brain Female	brain
3	chr21:41528800-41536000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr21:41530600-41533000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr21:41530600-41534000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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