Variant report

Variant	rs28376834
Chromosome Location	chr4:99860368-99860369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99859227..99861743-chr4:99914804..99916437,2	K562	blood:
2	chr4:99855411..99858062-chr4:99858581..99861119,2	MCF-7	breast:
3	chr4:99850612..99852997-chr4:99859731..99863013,3	MCF-7	breast:
4	chr4:99849708..99852991-chr4:99859247..99862215,3	MCF-7	breast:
5	chr4:99859661..99862481-chr4:99914701..99917220,3	MCF-7	breast:
6	chr4:99859570..99861239-chr4:99896485..99898875,2	K562	blood:
7	chr4:99855073..99856730-chr4:99859734..99862694,2	K562	blood:

Variant related genes	Relation type
ENSG00000151247	Chromatin interaction
ENSG00000164024	Chromatin interaction
ENSG00000238449	Chromatin interaction
ENSG00000263923	Chromatin interaction
ENSG00000251437	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10007957	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10008093	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10010610	0.93[ASN][1000 genomes]
rs10011791	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10019506	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10020687	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10022521	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10032966	0.93[ASN][1000 genomes]
rs10212891	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1036946	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10433891	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10433976	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10461135	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10470955	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516437	0.93[ASN][1000 genomes]
rs11725932	0.93[ASN][1000 genomes]
rs11728783	0.93[ASN][1000 genomes]
rs11737130	0.92[ASN][1000 genomes]
rs11737186	0.92[ASN][1000 genomes]
rs1230147	0.92[ASN][1000 genomes]
rs1230149	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1230150	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1230152	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1230189	0.84[ASN][1000 genomes]
rs17028238	0.98[ASN][1000 genomes]
rs17028241	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17028244	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17028293	0.99[ASN][1000 genomes]
rs17550514	0.98[ASN][1000 genomes]
rs2602889	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28367437	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28430857	0.94[ASN][1000 genomes]
rs28473608	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28499420	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28529446	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28575093	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28577966	0.94[ASN][1000 genomes]
rs28589528	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28613604	0.94[ASN][1000 genomes]
rs28622595	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28633499	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3133161	0.92[ASN][1000 genomes]
rs35447189	0.93[ASN][1000 genomes]
rs4699370	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60120090	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60658326	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532774	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6815444	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6830125	0.95[ASN][1000 genomes]
rs6841295	0.94[ASN][1000 genomes]
rs6846266	0.94[ASN][1000 genomes]
rs6846475	0.93[ASN][1000 genomes]
rs72677504	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72692622	0.95[ASN][1000 genomes]
rs7660937	0.97[ASN][1000 genomes]
rs7661487	0.99[ASN][1000 genomes]
rs7664964	0.94[ASN][1000 genomes]
rs7666015	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7671306	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7671453	0.95[ASN][1000 genomes]
rs7674319	0.94[ASN][1000 genomes]
rs7676504	0.95[ASN][1000 genomes]
rs7679685	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7684964	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7696573	0.94[ASN][1000 genomes]
rs7696584	0.94[ASN][1000 genomes]
rs7697071	0.94[ASN][1000 genomes]
rs9332467	0.94[ASN][1000 genomes]
rs994636	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9995478	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9996959	0.94[ASN][1000 genomes]
rs9999702	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99858400-99860600	Weak transcription	HepG2	liver
2	chr4:99859000-99861600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:99859200-99861000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:99859200-99861200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:99859400-99860800	Enhancers	HMEC	breast
6	chr4:99859600-99860600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:99859600-99860800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:99859800-99860800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:99859800-99860800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:99859800-99860800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:99859800-99860800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:99859800-99860800	Weak transcription	NHLF	lung
13	chr4:99859800-99861000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:99860000-99860400	Weak transcription	NH-A	brain
15	chr4:99860000-99861000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:99860000-99861000	Weak transcription	Osteobl	bone
17	chr4:99860000-99861200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:99860200-99860600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:99860200-99866200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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