Variant report

Variant	rs28377336
Chromosome Location	chr15:50099768-50099769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTWD1-5	chr15:50099752-50100023	expReg_chr15_3096_+

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs28420157	1.00[AMR][1000 genomes]
rs28420660	1.00[AMR][1000 genomes]
rs28505043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28530691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28546396	1.00[AFR][1000 genomes]
rs28565302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565343	0.91[AFR][1000 genomes]
rs28576129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28588706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28607999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28614053	0.91[AFR][1000 genomes]
rs28626033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28649721	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675758	1.00[AMR][1000 genomes]
rs28694493	1.00[AMR][1000 genomes]
rs28739554	0.91[AFR][1000 genomes]
rs28755841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28771808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28803895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28816214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28879375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28889088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1528	chr15:50067958-50112958	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1047047	chr15:50070224-50125096	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1042311	chr15:50083175-50125096	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2761888	chr15:50083187-50125108	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542381	chr15:50086150-50115876	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50098000-50101200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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