Variant report

Variant	rs28379460
Chromosome Location	chr15:43797416-43797417
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000268488	Chromatin interaction
ENSG00000166763	Chromatin interaction
ENSG00000067369	Chromatin interaction
ENSG00000238494	Chromatin interaction
ENSG00000242866	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17724631	0.84[EUR][1000 genomes]
rs17782608	0.92[EUR][1000 genomes]
rs28438815	0.80[EUR][1000 genomes]
rs28464256	0.84[EUR][1000 genomes]
rs28470226	0.88[EUR][1000 genomes]
rs28491813	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28717706	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43786000-43801800	Weak transcription	Primary T cells from cord blood	blood
2	chr15:43786200-43797800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:43786200-43798000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:43786200-43801200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:43786200-43801200	Weak transcription	Ovary	ovary
6	chr15:43786400-43798000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:43786400-43801000	Weak transcription	Dnd41	blood
8	chr15:43786600-43797600	Weak transcription	K562	blood
9	chr15:43789400-43801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:43794200-43802000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:43795400-43801800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:43796200-43800600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:43796600-43802000	Weak transcription	Aorta	Aorta
14	chr15:43796800-43802000	Weak transcription	Fetal Kidney	kidney
15	chr15:43797400-43799200	Enhancers	HSMM	muscle
16	chr15:43797400-43799200	Enhancers	HSMMtube	muscle
17	chr15:43797400-43799400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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