Variant report

Variant	rs17724631
Chromosome Location	chr15:43670343-43670344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43661645..43664142-chr15:43669573..43672436,3	MCF-7	breast:
2	chr15:43662908..43667194-chr15:43669241..43672354,4	K562	blood:

Variant related genes	Relation type
ENSG00000137822	Chromatin interaction
ENSG00000140265	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13329192	1.00[CEU][hapmap]
rs17782608	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28379460	0.84[EUR][1000 genomes]
rs28438815	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs28464256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28470226	0.87[EUR][1000 genomes]
rs28491813	0.84[EUR][1000 genomes]
rs28717706	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28723492	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43664000-43670800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:43664000-43670800	Weak transcription	Esophagus	oesophagus
3	chr15:43664000-43672000	Weak transcription	Lung	lung
4	chr15:43664000-43672200	Weak transcription	Spleen	Spleen
5	chr15:43664000-43673600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:43664000-43677200	Weak transcription	Aorta	Aorta
7	chr15:43664000-43692600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:43664200-43670800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:43664200-43672200	Weak transcription	Right Ventricle	heart
10	chr15:43664200-43678000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:43664400-43672200	Weak transcription	HSMMtube	muscle
12	chr15:43664400-43675200	Weak transcription	NHDF-Ad	bronchial
13	chr15:43664400-43675400	Weak transcription	Psoas Muscle	Psoas
14	chr15:43664400-43676400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:43664400-43677200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:43664600-43670400	Weak transcription	Fetal Brain Female	brain
17	chr15:43664600-43672000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:43664600-43672000	Weak transcription	Fetal Kidney	kidney
19	chr15:43664600-43672000	Weak transcription	Fetal Lung	lung
20	chr15:43664600-43673200	Weak transcription	Placenta	Placenta
21	chr15:43664600-43675400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr15:43664600-43675400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:43664600-43687800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:43664600-43688000	Weak transcription	Stomach Mucosa	stomach
25	chr15:43664600-43695600	Weak transcription	Fetal Heart	heart
26	chr15:43664800-43673200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:43664800-43675400	Weak transcription	Small Intestine	intestine
28	chr15:43665000-43670800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:43665000-43677600	Weak transcription	Fetal Brain Male	brain
30	chr15:43665000-43687800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:43665000-43730000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:43665200-43670800	Weak transcription	Thymus	Thymus
33	chr15:43665200-43672000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:43665200-43675400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr15:43665200-43676000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:43665200-43676200	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:43665200-43686600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:43665800-43670400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:43666400-43672800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:43667400-43681600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:43667600-43681600	Strong transcription	Hela-S3	cervix
42	chr15:43668000-43717800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:43668200-43672600	Strong transcription	K562	blood
44	chr15:43668200-43673400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:43668200-43674200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:43668200-43680400	Strong transcription	Fetal Stomach	stomach
47	chr15:43668200-43680600	Strong transcription	Fetal Muscle Leg	muscle
48	chr15:43668200-43680800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:43668200-43681400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr15:43668200-43681800	Strong transcription	Dnd41	blood

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