Variant report

Variant	rs28723492
Chromosome Location	chr15:43512604-43512605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10518793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs13329192	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs13329564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16957379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs17724631	1.00[CEU][hapmap]
rs28418723	0.86[EUR][1000 genomes]
rs28811106	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43489800-43513200	Weak transcription	Right Atrium	heart
2	chr15:43506400-43518600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:43510800-43512800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:43511600-43512800	Enhancers	HMEC	breast
5	chr15:43511800-43526600	Weak transcription	Esophagus	oesophagus
6	chr15:43512000-43512800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:43512200-43513000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:43512400-43513400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:43512400-43514000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:43512400-43514000	Flanking Active TSS	K562	blood
11	chr15:43512600-43512800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:43512600-43517800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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