Variant report

Variant	rs28811106
Chromosome Location	chr15:43434517-43434518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43424687..43428034-chr15:43433131..43438698,7	K562	blood:
2	chr15:43424554..43427279-chr15:43433886..43435896,3	MCF-7	breast:
3	chr15:43425606..43428403-chr15:43431821..43436252,4	K562	blood:

Variant related genes	Relation type
ENSG00000137842	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13329564	0.80[AMR][1000 genomes]
rs16957431	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17720890	0.80[ASN][1000 genomes]
rs17777687	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035169	0.83[AMR][1000 genomes]
rs2271962	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28539838	0.86[EUR][1000 genomes]
rs28605464	0.91[AMR][1000 genomes]
rs28691150	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28723492	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	nsv904144	chr15:43276345-43482127	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv1802035	chr15:43370916-43487742	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43426600-43442200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:43426800-43436400	Weak transcription	Primary T cells from cord blood	blood
3	chr15:43426800-43455800	Weak transcription	Fetal Lung	lung
4	chr15:43426800-43465400	Weak transcription	Psoas Muscle	Psoas
5	chr15:43427000-43440600	Weak transcription	Fetal Heart	heart
6	chr15:43427000-43442200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:43427000-43442200	Weak transcription	NH-A	brain
8	chr15:43427200-43436200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr15:43427200-43436400	Weak transcription	K562	blood
10	chr15:43427600-43475000	Weak transcription	Stomach Mucosa	stomach
11	chr15:43427800-43434600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:43427800-43435000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr15:43427800-43435600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:43427800-43435600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:43427800-43448400	Weak transcription	Fetal Kidney	kidney
16	chr15:43428000-43445600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:43428400-43435200	Strong transcription	Liver	Liver
18	chr15:43429000-43436800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:43429200-43435000	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:43429400-43444400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:43429800-43435800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:43430400-43436800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:43430400-43441000	Weak transcription	HSMMtube	muscle
24	chr15:43430600-43441200	Weak transcription	Hela-S3	cervix
25	chr15:43430600-43442000	Weak transcription	HMEC	breast
26	chr15:43431000-43442000	Weak transcription	Fetal Thymus	thymus
27	chr15:43431600-43435600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:43432200-43441000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:43432200-43446400	Weak transcription	Small Intestine	intestine
30	chr15:43432800-43435400	Weak transcription	GM12878-XiMat	blood
31	chr15:43432800-43436200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr15:43433000-43435600	Weak transcription	Dnd41	blood
33	chr15:43433000-43436600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:43433000-43441000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:43433200-43435800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr15:43433200-43436400	Weak transcription	HUVEC	blood vessel
37	chr15:43433200-43436800	Weak transcription	NHDF-Ad	bronchial
38	chr15:43433200-43441000	Weak transcription	Colonic Mucosa	Colon
39	chr15:43433200-43460600	Weak transcription	Right Ventricle	heart
40	chr15:43433400-43435800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:43433400-43436400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:43433400-43438400	Weak transcription	Brain Anterior Caudate	brain
43	chr15:43433400-43438600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:43433400-43440800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:43433400-43441200	Weak transcription	Brain Angular Gyrus	brain
46	chr15:43433400-43441200	Weak transcription	Lung	lung
47	chr15:43433400-43441800	Weak transcription	Aorta	Aorta
48	chr15:43433400-43441800	Weak transcription	Osteobl	bone
49	chr15:43433400-43442000	Weak transcription	NHLF	lung
50	chr15:43433400-43442400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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