Variant report

Variant	rs28381497
Chromosome Location	chr6:88322991-88322992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88315739..88318270-chr6:88321580..88323757,2	K562	blood:
2	chr6:88320993..88323406-chr6:88329947..88331786,2	K562	blood:

Variant related genes	Relation type
ENSG00000135336	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28381490	1.00[AMR][1000 genomes]
rs28381506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs29001625	1.00[AMR][1000 genomes]
rs9450784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88300400-88323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:88300600-88323400	Weak transcription	Gastric	stomach
3	chr6:88300600-88391200	Weak transcription	Colonic Mucosa	Colon
4	chr6:88300800-88323600	Weak transcription	Aorta	Aorta
5	chr6:88301000-88323600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:88301000-88330200	Weak transcription	Right Ventricle	heart
7	chr6:88301000-88347200	Weak transcription	Small Intestine	intestine
8	chr6:88301200-88323400	Weak transcription	Thymus	Thymus
9	chr6:88301200-88385000	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:88301400-88338400	Weak transcription	NHLF	lung
11	chr6:88301400-88354400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:88301400-88354600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:88302000-88347400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:88302000-88354400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:88302000-88354600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:88305000-88398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:88305200-88329000	Weak transcription	HSMMtube	muscle
18	chr6:88305800-88325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:88308800-88369800	Weak transcription	Fetal Brain Male	brain
20	chr6:88311400-88334600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:88312200-88371200	Weak transcription	NHEK	skin
22	chr6:88312400-88380600	Weak transcription	Brain Substantia Nigra	brain
23	chr6:88313800-88338200	Weak transcription	NHDF-Ad	bronchial
24	chr6:88314000-88384800	Weak transcription	Hela-S3	cervix
25	chr6:88314200-88399200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:88314600-88385000	Weak transcription	Esophagus	oesophagus
27	chr6:88315200-88327000	Weak transcription	Fetal Heart	heart
28	chr6:88315400-88327000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:88315400-88334600	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:88315800-88324400	Strong transcription	Placenta	Placenta
31	chr6:88315800-88324400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr6:88315800-88326800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:88315800-88327000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:88315800-88327200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:88316000-88324200	Strong transcription	Dnd41	blood
36	chr6:88316000-88325200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:88316200-88324400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:88316400-88330600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:88316600-88328200	Weak transcription	HUVEC	blood vessel
40	chr6:88316600-88381200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:88316600-88390000	Weak transcription	Pancreas	Pancrea
42	chr6:88316800-88324800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:88316800-88337800	Weak transcription	GM12878-XiMat	blood
44	chr6:88317200-88324400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:88317400-88324000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:88317400-88325400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:88317600-88325000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:88317800-88325200	Strong transcription	Stomach Smooth Muscle	stomach
49	chr6:88318600-88324200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:88318800-88324800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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