Variant report

Variant	rs29001625
Chromosome Location	chr6:88369530-88369531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88368493..88371498-chr6:88375456..88378461,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28381490	1.00[AMR][1000 genomes]
rs28381497	1.00[AMR][1000 genomes]
rs28381506	1.00[AMR][1000 genomes]
rs9450784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88300600-88391200	Weak transcription	Colonic Mucosa	Colon
2	chr6:88301200-88385000	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:88305000-88398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:88308800-88369800	Weak transcription	Fetal Brain Male	brain
5	chr6:88312200-88371200	Weak transcription	NHEK	skin
6	chr6:88312400-88380600	Weak transcription	Brain Substantia Nigra	brain
7	chr6:88314000-88384800	Weak transcription	Hela-S3	cervix
8	chr6:88314200-88399200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:88314600-88385000	Weak transcription	Esophagus	oesophagus
10	chr6:88316600-88381200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:88316600-88390000	Weak transcription	Pancreas	Pancrea
12	chr6:88320400-88400800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:88322800-88382000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:88324000-88369800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:88324000-88385000	Weak transcription	Gastric	stomach
16	chr6:88324200-88370200	Weak transcription	Psoas Muscle	Psoas
17	chr6:88324200-88378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:88324200-88380400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:88329800-88383200	Weak transcription	Lung	lung
20	chr6:88333400-88384800	Weak transcription	Brain Angular Gyrus	brain
21	chr6:88338800-88369600	Weak transcription	HSMMtube	muscle
22	chr6:88339200-88396800	Weak transcription	Right Ventricle	heart
23	chr6:88340000-88370000	Weak transcription	Spleen	Spleen
24	chr6:88344400-88384800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:88346400-88369600	Weak transcription	NH-A	brain
26	chr6:88346600-88373800	Weak transcription	Fetal Kidney	kidney
27	chr6:88346600-88376400	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:88347800-88378000	Weak transcription	Fetal Brain Female	brain
29	chr6:88348000-88385000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:88348600-88377600	Weak transcription	Brain Anterior Caudate	brain
31	chr6:88349000-88369600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:88349200-88373200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:88349200-88381400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:88349400-88377800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:88349400-88385000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:88349400-88397400	Weak transcription	Ovary	ovary
37	chr6:88355200-88379400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:88356600-88380400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:88358200-88392000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:88359800-88381000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr6:88361000-88380400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:88362200-88371800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:88363000-88408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:88363200-88371000	Weak transcription	Primary B cells from cord blood	blood
45	chr6:88363200-88395000	Weak transcription	Stomach Mucosa	stomach
46	chr6:88363400-88375800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:88364400-88373200	Weak transcription	Liver	Liver
48	chr6:88364400-88384800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:88364800-88376600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:88365000-88376600	Weak transcription	Primary hematopoietic stem cells	blood

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