Variant report

Variant	rs28382604
Chromosome Location	chr6:28499079-28499080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28490306..28492074-chr6:28498929..28501971,3	K562	blood:
2	chr6:28497815..28499320-chr6:28515031..28517956,2	K562	blood:
3	chr6:28498885..28501651-chr6:28502273..28504670,3	K562	blood:
4	chr6:28490306..28492074-chr6:28498929..28501092,2	K562	blood:
5	chr6:28494181..28496072-chr6:28498095..28502015,3	K562	blood:

Variant related genes	Relation type
ENSG00000198704	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12660763	0.94[ASN][1000 genomes]
rs12661782	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2064424	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071966	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2078035	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2078439	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2273106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35327256	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35921765	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs377514	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs380879	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs392230	0.82[AMR][1000 genomes]
rs448450	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4713166	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62402370	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6456824	0.81[AMR][1000 genomes]
rs6921021	0.81[EUR][1000 genomes]
rs6933732	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72844230	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs769189	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28494000-28499200	Weak transcription	K562	blood
2	chr6:28498600-28499600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:28498600-28499600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:28498600-28499600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:28498600-28499600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:28498600-28500000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:28498800-28500000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:28498800-28500000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:28498800-28500200	Enhancers	H1 Cell Line	embryonic stem cell

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