Variant report

Variant	rs6456824
Chromosome Location	chr6:28513135-28513136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28511881..28516576-chr6:28517392..28521415,6	K562	blood:
2	chr6:28511658..28513836-chr6:28633626..28636236,2	K562	blood:
3	chr6:28508074..28513880-chr6:28531341..28537609,9	K562	blood:
4	chr6:28509624..28513880-chr6:28531310..28536044,4	K562	blood:
5	chr6:28511955..28518467-chr6:28519043..28523058,10	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12662929	0.82[ASN][1000 genomes]
rs16894166	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16894169	0.85[ASN][1000 genomes]
rs16894171	0.85[ASN][1000 genomes]
rs16894191	0.83[ASN][1000 genomes]
rs2064424	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2071966	0.82[AMR][1000 genomes]
rs2143766	0.92[EUR][1000 genomes]
rs2273106	0.81[AMR][1000 genomes]
rs28382604	0.81[AMR][1000 genomes]
rs35327256	0.81[AMR][1000 genomes]
rs392230	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4711173	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4713173	0.84[ASN][1000 genomes]
rs4947335	0.87[ASN][1000 genomes]
rs55963280	0.85[ASN][1000 genomes]
rs56227726	0.85[ASN][1000 genomes]
rs58490223	0.84[ASN][1000 genomes]
rs62402376	0.97[ASN][1000 genomes]
rs62402378	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62402392	0.85[ASN][1000 genomes]
rs62402394	0.84[ASN][1000 genomes]
rs62406542	0.84[ASN][1000 genomes]
rs6942252	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72844230	0.88[AMR][1000 genomes]
rs72850099	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs769189	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7746909	0.83[ASN][1000 genomes]
rs7767144	0.85[ASN][1000 genomes]
rs9295775	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv435838	chr6:28507880-28514263	Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28510800-28521600	Weak transcription	Pancreas	Pancrea
2	chr6:28512200-28513800	Enhancers	K562	blood

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