Variant report

Variant	rs62402378
Chromosome Location	chr6:28514143-28514144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28511881..28516576-chr6:28517392..28521415,6	K562	blood:
2	chr6:28510407..28512273-chr6:28513492..28515889,2	K562	blood:
3	chr6:28511955..28518467-chr6:28519043..28523058,10	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12660763	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12661782	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12662929	0.85[ASN][1000 genomes]
rs16894166	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16894169	0.87[ASN][1000 genomes]
rs16894171	0.87[ASN][1000 genomes]
rs16894191	0.86[ASN][1000 genomes]
rs2064424	0.84[AMR][1000 genomes]
rs2143766	0.92[EUR][1000 genomes]
rs35327256	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs35403242	0.81[AFR][1000 genomes]
rs392230	0.92[EUR][1000 genomes]
rs4711173	0.95[ASN][1000 genomes]
rs4711174	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4711175	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4713166	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4713173	0.87[ASN][1000 genomes]
rs4947335	0.89[ASN][1000 genomes]
rs55963280	0.88[ASN][1000 genomes]
rs56227726	0.88[ASN][1000 genomes]
rs58490223	0.87[ASN][1000 genomes]
rs62402376	0.95[ASN][1000 genomes]
rs62402381	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62402390	0.82[ASN][1000 genomes]
rs62402392	0.88[ASN][1000 genomes]
rs62402394	0.87[ASN][1000 genomes]
rs62406542	0.87[ASN][1000 genomes]
rs62406553	0.80[ASN][1000 genomes]
rs6456824	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933732	0.89[AMR][1000 genomes]
rs6942252	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72844230	0.82[AMR][1000 genomes]
rs72850099	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs769189	0.84[AMR][1000 genomes]
rs7746909	0.86[ASN][1000 genomes]
rs7767144	0.87[ASN][1000 genomes]
rs9295775	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv435838	chr6:28507880-28514263	Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28510800-28521600	Weak transcription	Pancreas	Pancrea
2	chr6:28514000-28514200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links