Variant report

Variant	rs62402381
Chromosome Location	chr6:28531538-28531539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28527441..28530155-chr6:28531060..28532823,2	K562	blood:
2	chr6:28509624..28513880-chr6:28531310..28536044,4	K562	blood:
3	chr6:28529471..28535442-chr6:28536902..28541186,7	K562	blood:
4	chr6:28508074..28513880-chr6:28531341..28537609,9	K562	blood:
5	chr6:28531413..28534282-chr6:28574437..28577006,3	K562	blood:
6	chr6:27114607..27116563-chr6:28529860..28531607,2	K562	blood:
7	chr6:28529927..28531623-chr6:28556581..28558208,2	MCF-7	breast:
8	chr6:28530142..28532374-chr6:28538545..28540878,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000232040	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000197903	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12660763	0.81[AFR][1000 genomes]
rs12661782	0.81[AFR][1000 genomes]
rs16894166	0.95[AFR][1000 genomes]
rs2057296	0.93[ASN][1000 genomes]
rs35327256	0.81[AFR][1000 genomes]
rs35403242	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4711174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711175	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711178	0.90[ASN][1000 genomes]
rs4713166	0.81[AFR][1000 genomes]
rs55776584	0.87[ASN][1000 genomes]
rs62402378	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62402400	0.94[ASN][1000 genomes]
rs6942252	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72850099	0.95[AFR][1000 genomes]
rs7743296	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28530600-28533800	Enhancers	K562	blood
2	chr6:28531400-28531600	Enhancers	A549	lung
3	chr6:28531400-28531800	Enhancers	Liver	Liver
4	chr6:28531400-28532000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:28531400-28532000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:28531400-28532000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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