Variant report

Variant	rs55776584
Chromosome Location	chr6:28660515-28660516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12662929	0.89[AFR][1000 genomes]
rs16894171	0.89[AFR][1000 genomes]
rs16894191	0.89[AFR][1000 genomes]
rs2057296	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4711174	0.87[ASN][1000 genomes]
rs4711175	0.88[ASN][1000 genomes]
rs4711178	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713173	0.83[AFR][1000 genomes]
rs4713175	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4947335	0.89[AFR][1000 genomes]
rs55963280	0.86[AFR][1000 genomes]
rs58490223	0.84[AFR][1000 genomes]
rs62402381	0.87[ASN][1000 genomes]
rs62402392	0.89[AFR][1000 genomes]
rs62402394	0.87[AFR][1000 genomes]
rs62402400	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62406542	0.85[AFR][1000 genomes]
rs7743296	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28654200-28663600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28658200-28667400	Weak transcription	K562	blood
3	chr6:28659600-28661000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:28660000-28660800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:28660400-28661000	Weak transcription	NHEK	skin
6	chr6:28660400-28661600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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