Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27775097..27777835-chr6:28531573..28533204,2	K562	blood:
2	chr6:28509624..28513880-chr6:28531310..28536044,4	K562	blood:
3	chr6:28531771..28534007-chr6:28582545..28584317,2	K562	blood:
4	chr6:28529471..28535442-chr6:28536902..28541186,7	K562	blood:
5	chr6:28508074..28513880-chr6:28531341..28537609,9	K562	blood:
6	chr6:28457050..28459909-chr6:28532442..28533968,2	K562	blood:
7	chr6:28531413..28534282-chr6:28574437..28577006,3	K562	blood:
8	chr6:28532530..28535314-chr6:28537966..28540071,2	K562	blood:
9	chr6:28532871..28537837-chr6:28545273..28547393,5	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484541	1.00[YRI][hapmap]
rs12660763	0.81[AFR][1000 genomes]
rs12661782	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs16894166	0.95[AFR][1000 genomes]
rs17315739	1.00[YRI][hapmap]
rs17393066	0.88[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap]
rs2057296	0.93[ASN][1000 genomes]
rs2232419	0.88[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs35327256	0.81[AFR][1000 genomes]
rs35403242	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4711175	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711178	0.90[ASN][1000 genomes]
rs4713166	0.81[AFR][1000 genomes]
rs55776584	0.87[ASN][1000 genomes]
rs62402378	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62402381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62402400	0.94[ASN][1000 genomes]
rs6942252	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72850099	0.95[AFR][1000 genomes]
rs7743296	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4711174	LOC222699	cis	parietal	SCAN
rs4711174	HIST1H2AE	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28530600-28533800	Enhancers	K562	blood
2	chr6:28531600-28535200	Weak transcription	A549	lung
3	chr6:28531800-28534000	Weak transcription	Liver	Liver
4	chr6:28531800-28553200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:28532000-28533400	Weak transcription	HepG2	liver
6	chr6:28532000-28536400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:28532000-28552600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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