Variant report

Variant	rs17393066
Chromosome Location	chr6:28364793-28364794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28364273..28366438-chr6:28510597..28512229,2	K562	blood:
2	chr6:28364231..28371937-chr6:28372195..28378158,17	K562	blood:
3	chr6:28302194..28303885-chr6:28363135..28365627,2	K562	blood:
4	chr6:28302488..28304802-chr6:28363245..28366006,2	K562	blood:
5	chr6:28109361..28111458-chr6:28362788..28366324,4	K562	blood:

Variant related genes	Relation type
ENSG00000198315	Chromatin interaction
ENSG00000251877	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1015690	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10484540	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10484541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661782	0.88[LWK][hapmap];1.00[YRI][hapmap]
rs1555046	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1555047	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1556957	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16893801	0.82[CHB][hapmap]
rs16894038	0.82[AFR][1000 genomes]
rs16894121	1.00[CEU][hapmap]
rs17313059	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17313276	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17314224	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17314865	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]
rs17314991	0.82[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs17315340	0.81[EUR][1000 genomes]
rs17315648	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17315739	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17316033	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17392982	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17393342	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]
rs17393506	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17393786	0.81[EUR][1000 genomes]
rs17393918	0.81[EUR][1000 genomes]
rs17393939	0.81[EUR][1000 genomes]
rs17720687	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2027362	0.81[EUR][1000 genomes]
rs2072318	0.81[EUR][1000 genomes]
rs2072319	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs213231	0.85[CEU][hapmap]
rs2232419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232434	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2232438	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2299030	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs3734562	0.81[EUR][1000 genomes]
rs56001748	0.81[EUR][1000 genomes]
rs56241479	0.81[EUR][1000 genomes]
rs56787378	0.81[EUR][1000 genomes]
rs57126418	0.81[EUR][1000 genomes]
rs57204212	0.81[EUR][1000 genomes]
rs59732975	0.81[EUR][1000 genomes]
rs60184496	0.81[EUR][1000 genomes]
rs60660967	0.81[EUR][1000 genomes]
rs6915122	0.81[EUR][1000 genomes]
rs73740620	0.81[EUR][1000 genomes]
rs73740622	0.81[EUR][1000 genomes]
rs73740623	0.81[EUR][1000 genomes]
rs73742547	0.81[EUR][1000 genomes]
rs73742550	0.81[EUR][1000 genomes]
rs73742551	0.81[EUR][1000 genomes]
rs73742555	0.81[EUR][1000 genomes]
rs73742558	0.81[EUR][1000 genomes]
rs758396	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7757215	0.89[CHD][hapmap]
rs7774788	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9717944	0.81[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28352200-28365800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:28352600-28365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:28352600-28365800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:28353000-28364800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:28354200-28365600	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr6:28354400-28364800	Strong transcription	Fetal Stomach	stomach
7	chr6:28355800-28364800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:28358600-28365000	Weak transcription	Fetal Heart	heart
9	chr6:28359200-28365000	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:28359200-28366000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:28359200-28366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:28359200-28366600	Weak transcription	Right Ventricle	heart
13	chr6:28359400-28364800	Weak transcription	Esophagus	oesophagus
14	chr6:28359400-28365800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:28359400-28365800	Weak transcription	Gastric	stomach
16	chr6:28359400-28365800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:28359400-28365800	Weak transcription	Small Intestine	intestine
18	chr6:28359400-28366000	Weak transcription	HSMMtube	muscle
19	chr6:28359400-28366600	Weak transcription	Psoas Muscle	Psoas
20	chr6:28359400-28366800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:28359600-28366800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:28359800-28366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:28359800-28366800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:28360600-28364800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:28360800-28365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:28360800-28365800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:28360800-28366000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:28360800-28366600	Weak transcription	Colonic Mucosa	Colon
29	chr6:28361000-28364800	Weak transcription	Brain Angular Gyrus	brain
30	chr6:28361000-28365600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:28361000-28365600	Weak transcription	Brain Substantia Nigra	brain
32	chr6:28361000-28366600	Weak transcription	Fetal Kidney	kidney
33	chr6:28361000-28366800	Weak transcription	Aorta	Aorta
34	chr6:28361000-28366800	Weak transcription	Placenta	Placenta
35	chr6:28361200-28365000	Weak transcription	Liver	Liver
36	chr6:28361200-28365600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:28361200-28365600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:28361200-28366200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:28361200-28366800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:28361400-28364800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:28361400-28364800	Genic enhancers	Fetal Brain Female	brain
42	chr6:28361400-28364800	Weak transcription	A549	lung
43	chr6:28361400-28365400	Weak transcription	HSMM	muscle
44	chr6:28361400-28365600	Weak transcription	NHLF	lung
45	chr6:28361400-28365800	Weak transcription	Lung	lung
46	chr6:28361600-28365800	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:28361800-28366800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:28362000-28364800	Weak transcription	Osteobl	bone
49	chr6:28362000-28365200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr6:28362200-28365800	Strong transcription	Primary B cells from cord blood	blood

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