Variant report

Variant	rs73740622
Chromosome Location	chr6:28412171-28412172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:28411913-28412722	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28412139-28412189	Hepatocyte	liver:	n/a
2	chr6:28412139-28412189	HAEpiC	amniotic membrane:	n/a
3	chr6:28412139-28412189	NH-A	brain:	n/a
4	chr6:28412139-28412189	AG09319	gingival:	n/a
5	chr6:28412139-28412189	NHBE	bronchial:	n/a
6	chr6:28412139-28412189	HUVEC	blood vessel:	n/a
7	chr6:28412139-28412189	Hela-S3	cervix:	n/a
8	chr6:28412139-28412189	K562	blood:	n/a
9	chr6:28412139-28412189	ECC-1	luminal epithelium:	n/a
10	chr6:28412139-28412189	GM12891	blood:	n/a
11	chr6:28412139-28412189	NT2-D1	testis:	n/a
12	chr6:28412139-28412189	GM19239	blood:	n/a
13	chr6:28412139-28412189	HCT-116	colon:	n/a
14	chr6:28412139-28412189	CMK	blood:	n/a
15	chr6:28412139-28412189	HepG2	liver:	n/a
16	chr6:28412139-28412189	H1-hESC	embryonic stem cell:	embryo
17	chr6:28412139-28412189	HCPEpiC	choroid plexus:	n/a
18	chr6:28412139-28412189	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:28412139-28412189	HEK293	kidney:	embryo
20	chr6:28412139-28412189	AG09309	skin:	n/a
21	chr6:28412139-28412189	LNCaP	prostate:	n/a
22	chr6:28412139-28412189	HNPCEpiC	eye:	n/a
23	chr6:28412139-28412189	A549	lung:	n/a
24	chr6:28412139-28412189	NHDF-neo	bronchial:	n/a
25	chr6:28412139-28412189	AG04450	lung:	fetal
26	chr6:28412139-28412189	PANC-1	pancreas:	n/a
27	chr6:28412139-28412189	SAEC	small airway:	n/a
28	chr6:28412139-28412189	Jurkat	blood:	n/a
29	chr6:28412139-28412189	ProgFib	skin:	n/a
30	chr6:28412139-28412189	IMR90	lung:	fetal
31	chr6:28412139-28412189	SK-N-MC	brain:	n/a
32	chr6:28412139-28412189	GM12892	blood:	n/a
33	chr6:28412139-28412189	GM06990	blood:	n/a
34	chr6:28412139-28412189	AG10803	skin:	n/a
35	chr6:28412139-28412189	HRCEpiC	kidney:	n/a
36	chr6:28412139-28412189	GM12878	blood:	n/a
37	chr6:28412139-28412189	MCF10A-Er-Src	breast:	n/a
38	chr6:28412139-28412189	PFSK-1	brain:	n/a
39	chr6:28412139-28412189	AG04449	skin:	fetal
40	chr6:28412139-28412189	HL-60	blood:	n/a
41	chr6:28412139-28412189	T-47D	breast:	n/a
42	chr6:28412139-28412189	HCM	heart:	n/a
43	chr6:28412139-28412189	HMEC	breast:	n/a
44	chr6:28412139-28412189	SKMC	muscle:	n/a
45	chr6:28412139-28412189	HCF	heart:	n/a
46	chr6:28412139-28412189	ovcar-3	ovarian:	n/a
47	chr6:28412139-28412189	U87	brain:	n/a
48	chr6:28412139-28412189	Caco-2	colon:	n/a
49	chr6:28412139-28412189	NB4	blood:	n/a
50	chr6:28412139-28412189	RPTEC	kidney:	n/a

No data

Variant related genes	Relation type
COX11P1	TF binding region
ZSCAN23	TF binding region
ZSCAN23	CpG island
COX11P1	CpG island

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1015690	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484540	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484541	0.81[EUR][1000 genomes]
rs1555046	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1555047	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1556957	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16894121	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17313059	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17313276	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17314224	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17314865	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17314991	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17315340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17315648	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17315739	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17316033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17392982	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17393066	0.81[EUR][1000 genomes]
rs17393342	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17393506	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17393786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17393918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17393939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027362	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2072318	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2072319	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2232419	0.81[EUR][1000 genomes]
rs2232434	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2232438	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3734562	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56001748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241479	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56787378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57126418	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57204212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57366176	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59732975	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60184496	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60660967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73740609	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73740620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73740623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73742547	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73742550	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73742551	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73742555	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73742558	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs758396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9468378	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9717944	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28410400-28412400	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr6:28411600-28412200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
3	chr6:28411600-28412400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
4	chr6:28411600-28412400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:28411600-28412400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:28411600-28412400	Enhancers	Fetal Thymus	thymus
7	chr6:28411600-28412600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr6:28411600-28414400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:28411600-28414400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:28411600-28414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:28411600-28414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:28411600-28414600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:28411600-28414600	Weak transcription	NHLF	lung
14	chr6:28411600-28414800	Weak transcription	Aorta	Aorta
15	chr6:28411600-28414800	Weak transcription	Pancreas	Pancrea
16	chr6:28411800-28412200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:28411800-28412400	Active TSS	Primary T cells from cord blood	blood
18	chr6:28411800-28412400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr6:28411800-28412800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:28411800-28414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:28411800-28414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:28411800-28414400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:28411800-28414400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:28411800-28414400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:28411800-28414400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:28411800-28414400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:28411800-28414400	Weak transcription	NH-A	brain
28	chr6:28411800-28414400	Weak transcription	Osteobl	bone
29	chr6:28411800-28414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:28411800-28414600	Weak transcription	Right Ventricle	heart
31	chr6:28411800-28414600	Weak transcription	HSMM	muscle
32	chr6:28411800-28414600	Weak transcription	HSMMtube	muscle
33	chr6:28412000-28414400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:28412000-28414400	Weak transcription	HMEC	breast
35	chr6:28412000-28414600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:28412000-28414600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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