Variant report

Variant	rs2027362
Chromosome Location	chr6:28332698-28332699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28323337..28330678-chr6:28330738..28334657,8	K562	blood:
2	chr6:28332159..28333981-chr6:28361643..28364361,2	K562	blood:
3	chr6:28331703..28333940-chr6:28336261..28337790,2	MCF-7	breast:
4	chr6:28329274..28332112-chr6:28332342..28334041,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1015690	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10484540	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10484541	0.81[EUR][1000 genomes]
rs1555046	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1555047	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1556957	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16894121	0.97[EUR][1000 genomes]
rs17313059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17313276	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17314224	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17314865	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17314991	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17315340	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17315648	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17315739	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17316033	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17392982	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17393066	0.81[EUR][1000 genomes]
rs17393342	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17393506	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17393786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17393918	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17393939	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2072318	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2072319	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2232419	0.81[EUR][1000 genomes]
rs2232434	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2232438	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3734562	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56001748	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56241479	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56787378	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57126418	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57204212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57366176	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59732975	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60184496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60660967	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6915122	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73740609	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73740620	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73740622	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73740623	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73742547	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73742550	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73742551	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73742555	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73742558	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs758396	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7774788	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9468378	0.82[EUR][1000 genomes]
rs9717944	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28318400-28350800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:28324400-28333000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:28324400-28333000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:28324400-28333200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:28324400-28336000	Weak transcription	GM12878-XiMat	blood
6	chr6:28324400-28347600	Weak transcription	NHDF-Ad	bronchial
7	chr6:28324400-28347800	Weak transcription	Fetal Brain Male	brain
8	chr6:28324400-28348200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:28324400-28357200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:28324400-28357600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:28324600-28332800	Weak transcription	Fetal Heart	heart
12	chr6:28324600-28349400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:28324600-28349600	Weak transcription	NHEK	skin
14	chr6:28324600-28358600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:28324800-28341600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:28325000-28333200	Weak transcription	HMEC	breast
17	chr6:28325200-28333000	Weak transcription	Dnd41	blood
18	chr6:28325200-28333000	Weak transcription	NH-A	brain
19	chr6:28325400-28332800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:28325400-28350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:28325600-28333200	Weak transcription	HUVEC	blood vessel
22	chr6:28326800-28332800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:28326800-28335400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:28326800-28336200	Strong transcription	Adipose Nuclei	Adipose
25	chr6:28327000-28334800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:28327000-28334800	Strong transcription	Placenta	Placenta
27	chr6:28327000-28336200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:28327000-28336200	Strong transcription	Fetal Stomach	stomach
29	chr6:28327000-28337600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:28327200-28334600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:28327200-28335400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:28327200-28338400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:28327400-28334200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:28327400-28334400	Strong transcription	Fetal Intestine Large	intestine
35	chr6:28327800-28335200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:28327800-28335600	Strong transcription	K562	blood
37	chr6:28328000-28333000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:28328000-28334600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr6:28328000-28337000	Strong transcription	Liver	Liver
40	chr6:28328200-28334200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:28328200-28334400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:28328200-28334600	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:28328200-28334600	Strong transcription	Osteobl	bone
44	chr6:28328200-28334800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:28328200-28334800	Strong transcription	Fetal Lung	lung
46	chr6:28328200-28336800	Strong transcription	Fetal Muscle Leg	muscle
47	chr6:28328800-28334600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:28328800-28334800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr6:28328800-28334800	Strong transcription	Brain Anterior Caudate	brain
50	chr6:28329200-28334200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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