Variant report

Variant	rs9468378
Chromosome Location	chr6:28417385-28417386
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28416766..28418976-chr6:28420312..28423065,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1015690	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10484540	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1555046	0.82[EUR][1000 genomes]
rs1555047	0.82[EUR][1000 genomes]
rs1556957	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17313059	0.82[EUR][1000 genomes]
rs17313276	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17314224	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17314865	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17314991	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17315340	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17315648	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17315739	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17316033	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17392982	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17393342	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17393506	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17393786	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17393918	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17393939	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2027362	0.82[EUR][1000 genomes]
rs2072318	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2072319	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2232434	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2232438	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3734562	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56001748	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56241479	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56787378	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57126418	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57204212	0.82[EUR][1000 genomes]
rs59732975	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60184496	0.82[EUR][1000 genomes]
rs60660967	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6915122	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73740609	0.81[AMR][1000 genomes]
rs73740620	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73740622	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73740623	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73742547	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73742550	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73742551	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73742555	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73742558	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs758396	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7774788	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9717944	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9468378	ZSCAN12	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28416200-28417400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr6:28416200-28417600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr6:28416400-28417600	Enhancers	Primary T cells from cord blood	blood
4	chr6:28416400-28417600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:28416600-28418000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:28417200-28417600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:28417200-28417600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
8	chr6:28417200-28417600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--

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