Variant report

Variant	rs7757215
Chromosome Location	chr6:28212489-28212490
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28109153..28111615-chr6:28211056..28213393,2	K562	blood:
2	chr6:28210791..28213361-chr6:28321358..28323134,2	K562	blood:
3	chr6:28198039..28200844-chr6:28211243..28213952,3	MCF-7	breast:
4	chr6:28212035..28214916-chr6:28303443..28306359,2	K562	blood:
5	chr6:28206024..28209591-chr6:28211608..28215918,4	MCF-7	breast:
6	chr6:27861881..27864570-chr6:28212073..28213780,2	MCF-7	breast:
7	chr6:28126647..28130096-chr6:28211376..28213858,3	K562	blood:
8	chr6:28211961..28215218-chr6:28302381..28305532,5	K562	blood:
9	chr6:28202226..28208942-chr6:28209296..28217649,12	MCF-7	breast:
10	chr6:28212274..28214465-chr6:28325951..28327477,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198315	Chromatin interaction
ENSG00000226314	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1233710	0.85[CEU][hapmap]
rs1564442	0.82[JPT][hapmap]
rs1635	0.85[CEU][hapmap]
rs16893801	0.82[JPT][hapmap]
rs16893827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17393066	0.89[CHD][hapmap]
rs17720687	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17767294	0.82[JPT][hapmap]
rs2232419	0.89[CHD][hapmap]
rs2277103	0.82[JPT][hapmap]
rs2299030	0.85[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3757186	0.82[JPT][hapmap]
rs60913498	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66487884	0.96[ASN][1000 genomes]
rs73400572	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73400575	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400581	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750106	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28193600-28213400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:28193800-28218400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:28193800-28218400	Weak transcription	Stomach Mucosa	stomach
4	chr6:28194000-28212800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:28194000-28213000	Weak transcription	Thymus	Thymus
6	chr6:28194000-28213600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:28196800-28213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:28199200-28213200	Weak transcription	Colonic Mucosa	Colon
9	chr6:28199800-28213600	Weak transcription	NHDF-Ad	bronchial
10	chr6:28200400-28212600	Weak transcription	NHEK	skin
11	chr6:28200800-28212600	Weak transcription	Fetal Heart	heart
12	chr6:28201000-28212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:28201000-28212800	Weak transcription	Pancreas	Pancrea
14	chr6:28201000-28212800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:28201000-28212800	Weak transcription	Right Ventricle	heart
16	chr6:28201600-28212600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:28201600-28212600	Weak transcription	Brain Angular Gyrus	brain
18	chr6:28201600-28212600	Weak transcription	Fetal Brain Male	brain
19	chr6:28201600-28212800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:28201600-28212800	Weak transcription	Gastric	stomach
21	chr6:28201600-28213000	Weak transcription	HepG2	liver
22	chr6:28201600-28213400	Weak transcription	Fetal Kidney	kidney
23	chr6:28201600-28219400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:28202000-28212600	Weak transcription	HSMMtube	muscle
25	chr6:28202000-28213000	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:28202200-28212600	Weak transcription	A549	lung
27	chr6:28202200-28213200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:28202400-28213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:28202600-28212600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:28202800-28212600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:28202800-28212800	Weak transcription	K562	blood
32	chr6:28203000-28218400	Weak transcription	HUVEC	blood vessel
33	chr6:28204000-28214200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:28204200-28212600	Weak transcription	Spleen	Spleen
35	chr6:28204200-28212800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:28206600-28212800	Weak transcription	Lung	lung
37	chr6:28206800-28212800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr6:28206800-28212800	Weak transcription	Ovary	ovary
39	chr6:28206800-28213000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:28206800-28213400	Weak transcription	Aorta	Aorta
41	chr6:28207000-28212600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:28210800-28212600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:28210800-28212600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:28211000-28212800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:28211000-28212800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:28211000-28216200	Strong transcription	Brain Hippocampus Middle	brain
47	chr6:28211000-28216800	Strong transcription	Brain Germinal Matrix	brain
48	chr6:28211000-28217200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:28211000-28217200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:28211000-28217600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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