Variant report

Variant	rs1564442
Chromosome Location	chr6:28132426-28132427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28129655..28131300-chr6:28132015..28133601,2	MCF-7	breast:
2	chr6:28130769..28134274-chr6:28187281..28190236,3	K562	blood:
3	chr6:28131833..28133756-chr6:28192873..28194644,2	K562	blood:

Variant related genes	Relation type
ENSG00000137185	Chromatin interaction
ENSG00000226314	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10046419	1.00[CHB][hapmap]
rs12332927	0.82[CHB][hapmap]
rs16893533	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs16893540	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs16893638	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893761	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16893827	0.82[JPT][hapmap]
rs17720687	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17765402	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17767294	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.94[ASN][1000 genomes]
rs2277103	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299030	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs35027728	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59910759	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400515	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400551	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757215	0.82[JPT][hapmap]
rs9468264	1.00[CHB][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28127000-28134200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:28129800-28134000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:28129800-28138800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:28129800-28142200	Weak transcription	Aorta	Aorta
5	chr6:28129800-28145400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:28130000-28136000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:28130000-28136200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:28130000-28136800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:28130000-28139000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:28130000-28141400	Weak transcription	Right Ventricle	heart
11	chr6:28130000-28142600	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:28130200-28132800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:28130200-28132800	Weak transcription	Right Atrium	heart
14	chr6:28130200-28134400	Weak transcription	Liver	Liver
15	chr6:28130200-28134400	Weak transcription	Osteobl	bone
16	chr6:28130200-28134600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:28130200-28134600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:28130200-28134600	Weak transcription	HSMMtube	muscle
19	chr6:28130200-28135400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:28130200-28136200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:28130200-28137400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:28130200-28137600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:28130200-28138600	Weak transcription	Primary B cells from cord blood	blood
24	chr6:28130200-28138600	Weak transcription	Brain Anterior Caudate	brain
25	chr6:28130200-28139200	Weak transcription	Fetal Brain Female	brain
26	chr6:28130200-28140600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:28130200-28141800	Weak transcription	Fetal Kidney	kidney
28	chr6:28130200-28142800	Weak transcription	Left Ventricle	heart
29	chr6:28130400-28132600	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:28130400-28133200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:28130400-28133400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:28130400-28133800	Weak transcription	Ovary	ovary
33	chr6:28130400-28134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:28130400-28139200	Weak transcription	Adipose Nuclei	Adipose
35	chr6:28130400-28140200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:28130400-28140800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:28130400-28142600	Weak transcription	Psoas Muscle	Psoas
38	chr6:28130600-28133400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:28130600-28139000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:28130600-28139200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:28130600-28139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:28130600-28139800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:28130600-28141800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:28131200-28135800	Weak transcription	K562	blood

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