Variant report

Variant	rs16893638
Chromosome Location	chr6:28040581-28040582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1564442	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893731	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893761	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893801	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17767294	0.94[ASN][1000 genomes]
rs2277103	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35027728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757186	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59910759	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396575	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400515	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400532	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400551	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links