Variant report

Variant	rs2277103
Chromosome Location	chr6:28109633-28109634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:479)
CpG islands
(count:61)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:479 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:28109305-28109863	K562	blood:	n/a	n/a
2	ARID3A	chr6:28109342-28110108	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:28109227-28109996	HepG2	liver:	n/a	n/a
4	MAX	chr6:28109203-28109994	K562	blood:	n/a	n/a
5	SIN3AK20	chr6:28109429-28109818	A549	lung:	n/a	n/a
6	TAF1	chr6:28109219-28109993	H1-neurons	neurons:	n/a	n/a
7	TCF7L2	chr6:28109459-28109929	PANC-1	pancreas:	n/a	n/a
8	THAP1	chr6:28109361-28109865	K562	blood:	n/a	n/a
9	BCLAF1	chr6:28109349-28110022	K562	blood:	n/a	chr6:28109622-28109631
10	MXI1	chr6:28109382-28110109	K562	blood:	n/a	n/a
11	ELK1	chr6:28109379-28109891	Hela-S3	cervix:	n/a	chr6:28109622-28109631 chr6:28109622-28109631
12	TAF1	chr6:28109495-28109847	Hela-S3	cervix:	n/a	n/a
13	SIN3AK20	chr6:28109382-28109817	H1-hESC	embryonic stem cell:	n/a	n/a
14	ZNF143	chr6:28109354-28109938	Hela-S3	cervix:	n/a	n/a
15	NR2F2	chr6:28109440-28109859	K562	blood:	n/a	n/a
16	CREB1	chr6:28109130-28110116	HepG2	liver:	n/a	n/a
17	POLR2A	chr6:28109241-28110056	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr6:28109305-28110042	HL-60	blood:	n/a	n/a
19	REST	chr6:28109377-28109988	HL-60	blood:	n/a	chr6:28109479-28109492 chr6:28109466-28109474
20	SP2	chr6:28109197-28110105	HepG2	liver:	n/a	n/a
21	GABPA	chr6:28109480-28109799	Hela-S3	cervix:	n/a	n/a
22	EGR1	chr6:28109463-28109710	GM12878	blood:	n/a	chr6:28109622-28109631
23	SP4	chr6:28109277-28109858	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr6:28109279-28109984	A549	lung:	n/a	n/a
25	POLR2A	chr6:28109223-28109997	GM18505	blood:	n/a	n/a
26	POLR2A	chr6:28109310-28109969	H1-hESC	embryonic stem cell:	n/a	n/a
27	RFX5	chr6:28109252-28109920	GM12878	blood:	n/a	n/a
28	MTA3	chr6:28109079-28109899	GM12878	blood:	n/a	n/a
29	CTCFL	chr6:28109614-28109873	K562	blood:	n/a	n/a
30	POLR2A	chr6:28109302-28110001	MCF-7	breast:	n/a	n/a
31	RAD21	chr6:28109429-28109959	SK-N-SH_RA	brain:	n/a	chr6:28109860-28109873
32	ZNF217	chr6:28109194-28109721	MCF-7	breast:	n/a	n/a
33	MYC	chr6:28109292-28109895	K562	blood:	n/a	n/a
34	SP2	chr6:28109211-28110038	K562	blood:	n/a	n/a
35	POLR2A	chr6:28109061-28110164	PFSK-1	brain:	n/a	n/a
36	ZBTB7A	chr6:28109359-28110046	ECC-1	luminal epithelium:	n/a	n/a
37	TAF1	chr6:28109498-28109887	GM12891	blood:	n/a	n/a
38	HEY1	chr6:28109220-28110034	K562	blood:	n/a	n/a
39	SIN3A	chr6:28109391-28110030	GM12878	blood:	n/a	n/a
40	HDAC2	chr6:28109164-28110079	MCF-7	breast:	n/a	chr6:28109406-28109415
41	HDAC2	chr6:28109195-28110059	HepG2	liver:	n/a	chr6:28109406-28109415
42	FOXM1	chr6:28109168-28109956	GM12878	blood:	n/a	n/a
43	POLR2A	chr6:28109315-28110039	MCF-7	breast:	n/a	n/a
44	GABPA	chr6:28109012-28110358	MCF-7	breast:	n/a	chr6:28109409-28109418
45	POLR2A	chr6:28109332-28109913	A549	lung:	n/a	n/a
46	MAX	chr6:28109133-28110143	HepG2	liver:	n/a	n/a
47	MAX	chr6:28109264-28109948	MCF-7	breast:	n/a	n/a
48	RAD21	chr6:28109338-28110211	IMR90	lung:	n/a	chr6:28109860-28109873
49	TBL1XR1	chr6:28109339-28109944	GM12878	blood:	n/a	n/a
50	POLR2A	chr6:28109283-28109969	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28109624-28109674	SAEC	small airway:	n/a
2	chr6:28109624-28109674	HEEpiC	esophagus:	n/a
3	chr6:28109624-28109674	H1-hESC	embryonic stem cell:	embryo
4	chr6:28109624-28109674	PrEC	prostate:	n/a
5	chr6:28109624-28109674	LNCaP	prostate:	n/a
6	chr6:28109624-28109674	CMK	blood:	n/a
7	chr6:28109624-28109674	NHBE	bronchial:	n/a
8	chr6:28109624-28109674	AG10803	skin:	n/a
9	chr6:28109624-28109674	Hepatocyte	liver:	n/a
10	chr6:28109624-28109674	PANC-1	pancreas:	n/a
11	chr6:28109624-28109674	SK-N-SH_RA	brain:	n/a
12	chr6:28109624-28109674	AG09319	gingival:	n/a
13	chr6:28109624-28109674	T-47D	breast:	n/a
14	chr6:28109624-28109674	HL-60	blood:	n/a
15	chr6:28109624-28109674	GM19239	blood:	n/a
16	chr6:28109624-28109674	GM12892	blood:	n/a
17	chr6:28109624-28109674	ECC-1	luminal epithelium:	n/a
18	chr6:28109624-28109674	A549	lung:	n/a
19	chr6:28109624-28109674	GM12878	blood:	n/a
20	chr6:28109624-28109674	GM12891	blood:	n/a
21	chr6:28109624-28109674	GM06990	blood:	n/a
22	chr6:28109624-28109674	NHDF-neo	bronchial:	n/a
23	chr6:28109624-28109674	HCM	heart:	n/a
24	chr6:28109624-28109674	ovcar-3	ovarian:	n/a
25	chr6:28109624-28109674	HCPEpiC	choroid plexus:	n/a
26	chr6:28109624-28109674	HMEC	breast:	n/a
27	chr6:28109624-28109674	AG04450	lung:	fetal
28	chr6:28109624-28109674	HNPCEpiC	eye:	n/a
29	chr6:28109624-28109674	HRPEpiC	eye:	n/a
30	chr6:28109624-28109674	NT2-D1	testis:	n/a
31	chr6:28109624-28109674	U87	brain:	n/a
32	chr6:28109624-28109674	HUVEC	blood vessel:	n/a
33	chr6:28109624-28109674	BJ	skin:	n/a
34	chr6:28109624-28109674	HRCEpiC	kidney:	n/a
35	chr6:28109624-28109674	HCF	heart:	n/a
36	chr6:28109624-28109674	HEK293	kidney:	embryo
37	chr6:28109624-28109674	HepG2	liver:	n/a
38	chr6:28109624-28109674	SK-N-MC	brain:	n/a
39	chr6:28109624-28109674	RPTEC	kidney:	n/a
40	chr6:28109624-28109674	MCF10A-Er-Src	breast:	n/a
41	chr6:28109624-28109674	IMR90	lung:	fetal
42	chr6:28109624-28109674	PFSK-1	brain:	n/a
43	chr6:28109624-28109674	K562	blood:	n/a
44	chr6:28109624-28109674	SKMC	muscle:	n/a
45	chr6:28109624-28109674	HRE	kidney:	n/a
46	chr6:28109624-28109674	AG04449	skin:	fetal
47	chr6:28109624-28109674	HAEpiC	amniotic membrane:	n/a
48	chr6:28109624-28109674	HIPEpiC	eye:	n/a
49	chr6:28109624-28109674	Jurkat	blood:	n/a
50	chr6:28109624-28109674	HCT-116	colon:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
2	chr6:28109464..28110985-chr6:28218502..28221254,2	MCF-7	breast:
3	chr6:28109265..28112090-chr6:28302311..28305142,2	MCF-7	breast:
4	chr6:28103055..28111556-chr6:28296771..28308203,17	K562	blood:
5	chr6:28109273..28111011-chr6:28302779..28305242,3	MCF-7	breast:
6	chr6:27791730..27793405-chr6:28109237..28111401,3	K562	blood:
7	chr6:28109577..28112061-chr6:28128257..28130394,3	MCF-7	breast:
8	chr6:28108436..28110620-chr6:28192837..28194996,3	MCF-7	breast:
9	chr6:28109524..28111212-chr6:28366058..28368601,2	K562	blood:
10	chr6:27776967..27779185-chr6:28109334..28112184,3	K562	blood:
11	chr6:28091137..28098786-chr6:28103559..28111884,14	MCF-7	breast:
12	chr6:28044713..28049958-chr6:28107484..28111355,5	K562	blood:
13	chr6:28108043..28113786-chr6:28190485..28194607,10	K562	blood:
14	chr6:28109506..28111867-chr6:28218476..28220389,2	K562	blood:
15	chr6:28108695..28111169-chr6:28321228..28323056,2	K562	blood:
16	chr6:28108272..28111912-chr6:28184259..28187979,3	MCF-7	breast:
17	chr6:28092149..28093653-chr6:28108097..28109825,2	MCF-7	breast:
18	chr6:28109157..28111504-chr6:28323298..28325916,3	K562	blood:
19	chr6:28099723..28110178-chr6:28301599..28306918,14	K562	blood:
20	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:

No data

Variant related genes	Relation type
ZSCAN16-AS1	TF binding region
ZKSCAN8	TF binding region
ZKSCAN8	CpG island
ZSCAN16-AS1	CpG island
ENSG00000137185	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000176933	Chromatin interaction
ENSG00000196812	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000158691	Chromatin interaction
ENSG00000226314	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000272009	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10046419	1.00[CHB][hapmap]
rs12332927	0.82[CHB][hapmap]
rs1564442	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893533	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs16893540	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs16893638	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893761	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16893827	0.82[JPT][hapmap]
rs17720687	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17765402	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17767294	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.94[ASN][1000 genomes]
rs2299030	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs35027728	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59910759	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400515	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400551	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757215	0.82[JPT][hapmap]
rs9461424	1.00[CHB][hapmap]
rs9461425	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs9468264	1.00[CHB][hapmap]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28107800-28110800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:28108000-28110600	Active TSS	Brain Anterior Caudate	brain
3	chr6:28108000-28111000	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:28108400-28110800	Active TSS	NHDF-Ad	bronchial
5	chr6:28109000-28110000	Bivalent/Poised TSS	Fetal Stomach	stomach
6	chr6:28109000-28110200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
7	chr6:28109000-28110200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
8	chr6:28109000-28110400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:28109000-28110400	Active TSS	Brain Substantia Nigra	brain
10	chr6:28109000-28110400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr6:28109000-28110400	Active TSS	Fetal Lung	lung
12	chr6:28109000-28110400	Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr6:28109000-28110400	Active TSS	HUVEC	blood vessel
14	chr6:28109000-28110600	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr6:28109000-28110600	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr6:28109000-28110600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
17	chr6:28109000-28110600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:28109000-28110600	Active TSS	Brain Cingulate Gyrus	brain
19	chr6:28109000-28110600	Active TSS	A549	lung
20	chr6:28109000-28110600	Active TSS	NH-A	brain
21	chr6:28109000-28110800	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:28109000-28110800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:28109000-28110800	Active TSS	Muscle Satellite Cultured Cells	--
24	chr6:28109000-28110800	Active TSS	Fetal Muscle Leg	muscle
25	chr6:28109000-28111000	Active TSS	H1 Cell Line	embryonic stem cell
26	chr6:28109000-28111000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:28109000-28111000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:28109000-28111000	Active TSS	Fetal Brain Female	brain
29	chr6:28109000-28111000	Active TSS	HSMMtube	muscle
30	chr6:28109000-28111000	Active TSS	NHLF	lung
31	chr6:28109000-28111400	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr6:28109200-28109800	Flanking Active TSS	Dnd41	blood
33	chr6:28109200-28110000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
34	chr6:28109200-28110000	Transcr. at gene 5' and 3'	Right Atrium	heart
35	chr6:28109200-28110000	Active TSS	Spleen	Spleen
36	chr6:28109200-28110200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:28109200-28110200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr6:28109200-28110200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:28109200-28110200	Active TSS	Fetal Brain Male	brain
40	chr6:28109200-28110200	Active TSS	Gastric	stomach
41	chr6:28109200-28110200	Active TSS	Lung	lung
42	chr6:28109200-28110200	Active TSS	Pancreas	Pancrea
43	chr6:28109200-28110200	Active TSS	Placenta Amnion	Placenta Amnion
44	chr6:28109200-28110200	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr6:28109200-28110200	Active TSS	Small Intestine	intestine
46	chr6:28109200-28110400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:28109200-28110400	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr6:28109200-28110400	Active TSS	Colon Smooth Muscle	Colon
49	chr6:28109200-28110400	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr6:28109200-28110400	Active TSS	Fetal Intestine Large	intestine

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