Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27860192..27862339-chr6:28006448..28008221,2	K562	blood:
2	chr6:27798196..27799988-chr6:28007455..28009647,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10046424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12178430	0.83[ASN][1000 genomes]
rs12332927	0.82[CHB][hapmap]
rs12333142	0.91[ASN][1000 genomes]
rs1497525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs1497526	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1564442	1.00[CHB][hapmap]
rs16893533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs16893540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs16893549	0.91[ASN][1000 genomes]
rs16893731	1.00[CHB][hapmap]
rs16893801	1.00[CHB][hapmap]
rs17763319	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17765402	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17767294	1.00[CHB][hapmap]
rs1873213	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2277103	1.00[CHB][hapmap]
rs2299030	0.82[CHB][hapmap]
rs3757186	1.00[CHB][hapmap]
rs6456803	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs73386659	0.83[ASN][1000 genomes]
rs73392694	0.83[ASN][1000 genomes]
rs73394718	0.81[ASN][1000 genomes]
rs7760871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs9461420	0.87[ASN][1000 genomes]
rs9461424	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9461425	1.00[CHB][hapmap]
rs9468252	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs9468254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9468264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap]
rs9885649	0.82[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv883513	chr6:27982152-28033087	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv981052	chr6:27987196-28024382	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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