Variant report

Variant	rs16893549
Chromosome Location	chr6:27971931-27971932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27965316..27968016-chr6:27970592..27972506,2	K562	blood:
2	chr6:27969309..27971948-chr6:27974273..27976504,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10046419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.91[ASN][1000 genomes]
rs10046424	0.91[ASN][1000 genomes]
rs12332927	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12333142	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1497526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1564442	1.00[CHB][hapmap]
rs16893533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16893540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893731	1.00[CHB][hapmap]
rs17763319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs17765402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17767294	1.00[CHB][hapmap]
rs1873213	1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2277103	1.00[CHB][hapmap]
rs3757186	1.00[CHB][hapmap]
rs6456803	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs73386659	0.82[AFR][1000 genomes]
rs73392694	0.82[AFR][1000 genomes]
rs73394718	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7760871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295750	0.82[CHB][hapmap]
rs9461419	0.87[EUR][1000 genomes]
rs9461420	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9461424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9461425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9468252	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs9468254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9468264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9885649	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27969800-27972200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:27970800-27973800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:27971000-27972600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:27971200-27972400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:27971200-27973600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:27971200-27974200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:27971400-27973400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:27971600-27972200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:27971600-27973200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:27971800-27972000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:27971800-27972000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr6:27971800-27972200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:27971800-27972600	Enhancers	Fetal Stomach	stomach
14	chr6:27971800-27973400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:27971800-27973800	Enhancers	K562	blood
16	chr6:27971800-27974000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr6:27971800-27974000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:27971800-27974800	Enhancers	HUES64 Cell Line	embryonic stem cell

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