Variant report

Variant	rs16893731
Chromosome Location	chr6:28130194-28130195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT1	chr6:28130147-28130711	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr6:28129046-28130264	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr6:28128541-28130207	HepG2	liver:	n/a	n/a
4	USF1	chr6:28130084-28130386	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28109577..28112061-chr6:28128257..28130394,3	MCF-7	breast:
2	chr17:73851685..73852659-chr6:28129475..28130353,2	Hela-S3	cervix:
3	chr6:28129539..28132293-chr6:28218155..28220468,2	K562	blood:
4	chr6:28126892..28131515-chr6:28301205..28304944,6	K562	blood:
5	chr6:27775710..27777880-chr6:28129434..28132036,2	K562	blood:
6	chr6:28127970..28130555-chr6:28316475..28318965,2	K562	blood:
7	chr6:28129397..28131360-chr6:28191862..28193480,2	K562	blood:
8	chr6:27857955..27860857-chr6:28129284..28131805,2	K562	blood:

No data

Variant related genes	Relation type
ZNF192P1	TF binding region
ENSG00000187626	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000132471	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000196747	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10046419	1.00[CHB][hapmap]
rs12332927	0.82[CHB][hapmap]
rs1564442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893533	1.00[CHB][hapmap]
rs16893540	1.00[CHB][hapmap]
rs16893638	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893761	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16893827	0.82[JPT][hapmap]
rs17720687	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17765402	1.00[CHB][hapmap]
rs17767294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[ASN][1000 genomes]
rs2277103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299030	0.82[CHB][hapmap]
rs35027728	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59910759	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400515	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400551	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468264	1.00[CHB][hapmap]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28127000-28134200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:28129000-28130200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28129000-28130200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:28129000-28130200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:28129000-28130200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:28129000-28130200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:28129000-28130200	Active TSS	Fetal Brain Female	brain
8	chr6:28129000-28130200	Active TSS	Fetal Kidney	kidney
9	chr6:28129000-28130200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:28129000-28130400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:28129000-28130400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr6:28129000-28130400	Active TSS	Psoas Muscle	Psoas
13	chr6:28129000-28130400	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr6:28129000-28130600	Active TSS	GM12878-XiMat	blood
15	chr6:28129200-28130200	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr6:28129200-28130200	Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr6:28129200-28130200	Active TSS	Brain Anterior Caudate	brain
18	chr6:28129200-28130200	Active TSS	Rectal Mucosa Donor 31	rectum
19	chr6:28129200-28130200	Active TSS	HSMMtube	muscle
20	chr6:28129200-28130200	Active TSS	NHLF	lung
21	chr6:28129200-28130400	Active TSS	Rectal Smooth Muscle	rectum
22	chr6:28129600-28130200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:28129600-28130200	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr6:28129600-28130200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr6:28129600-28130400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:28129800-28130200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr6:28129800-28130200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr6:28129800-28130200	Active TSS	Primary B cells from cord blood	blood
29	chr6:28129800-28130200	Enhancers	Primary B cells from peripheral blood	blood
30	chr6:28129800-28130200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:28129800-28130200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:28129800-28130200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:28129800-28130200	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr6:28129800-28130200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:28129800-28130200	Flanking Active TSS	Colon Smooth Muscle	Colon
36	chr6:28129800-28130200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr6:28129800-28130200	Active TSS	Fetal Muscle Trunk	muscle
38	chr6:28129800-28130200	Enhancers	Placenta	Placenta
39	chr6:28129800-28130200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr6:28129800-28130200	Flanking Active TSS	NHEK	skin
41	chr6:28129800-28130400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:28129800-28134000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:28129800-28138800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:28129800-28142200	Weak transcription	Aorta	Aorta
45	chr6:28129800-28145400	Weak transcription	Brain Angular Gyrus	brain
46	chr6:28130000-28130200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr6:28130000-28130200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
48	chr6:28130000-28130200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
49	chr6:28130000-28130200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:28130000-28130200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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