Variant report

Variant	rs60913498
Chromosome Location	chr6:28211457-28211458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28109153..28111615-chr6:28211056..28213393,2	K562	blood:
2	chr6:28210791..28213361-chr6:28321358..28323134,2	K562	blood:
3	chr6:28198039..28200844-chr6:28211243..28213952,3	MCF-7	breast:
4	chr6:28126647..28130096-chr6:28211376..28213858,3	K562	blood:
5	chr6:28202226..28208942-chr6:28209296..28217649,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198315	Chromatin interaction
ENSG00000226314	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16893827	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17720687	0.90[ASN][1000 genomes]
rs2299030	0.87[ASN][1000 genomes]
rs66487884	0.96[ASN][1000 genomes]
rs73400572	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73400575	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400581	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757215	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28193600-28213400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:28193800-28211800	Weak transcription	Fetal Thymus	thymus
3	chr6:28193800-28218400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:28193800-28218400	Weak transcription	Stomach Mucosa	stomach
5	chr6:28194000-28211800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:28194000-28212800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:28194000-28213000	Weak transcription	Thymus	Thymus
8	chr6:28194000-28213600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:28196800-28212400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:28196800-28212400	Weak transcription	Small Intestine	intestine
11	chr6:28196800-28213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:28197000-28212400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:28198800-28212200	Weak transcription	Hela-S3	cervix
14	chr6:28199200-28213200	Weak transcription	Colonic Mucosa	Colon
15	chr6:28199800-28213600	Weak transcription	NHDF-Ad	bronchial
16	chr6:28200400-28212400	Weak transcription	Fetal Intestine Small	intestine
17	chr6:28200400-28212600	Weak transcription	NHEK	skin
18	chr6:28200800-28212400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:28200800-28212600	Weak transcription	Fetal Heart	heart
20	chr6:28201000-28211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:28201000-28212200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:28201000-28212200	Weak transcription	Brain Anterior Caudate	brain
23	chr6:28201000-28212400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:28201000-28212400	Weak transcription	HMEC	breast
25	chr6:28201000-28212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:28201000-28212800	Weak transcription	Pancreas	Pancrea
27	chr6:28201000-28212800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:28201000-28212800	Weak transcription	Right Ventricle	heart
29	chr6:28201200-28212200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:28201600-28211600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:28201600-28211800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:28201600-28212000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:28201600-28212400	Weak transcription	Esophagus	oesophagus
34	chr6:28201600-28212600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:28201600-28212600	Weak transcription	Brain Angular Gyrus	brain
36	chr6:28201600-28212600	Weak transcription	Fetal Brain Male	brain
37	chr6:28201600-28212800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:28201600-28212800	Weak transcription	Gastric	stomach
39	chr6:28201600-28213000	Weak transcription	HepG2	liver
40	chr6:28201600-28213400	Weak transcription	Fetal Kidney	kidney
41	chr6:28201600-28219400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:28201800-28211800	Weak transcription	Osteobl	bone
43	chr6:28201800-28212000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:28202000-28211600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:28202000-28211800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:28202000-28212000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:28202000-28212000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:28202000-28212000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:28202000-28212200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:28202000-28212600	Weak transcription	HSMMtube	muscle

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