Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:28582156..28586237-chr6:28601069..28603430,3	K562	blood:
2	chr6:28366328..28369247-chr6:28582607..28584582,2	K562	blood:
3	chr6:27833103..27835859-chr6:28582647..28584529,2	K562	blood:
4	chr6:28556555..28559076-chr6:28582763..28585041,2	K562	blood:
5	chr6:28233569..28236323-chr6:28583574..28585743,2	K562	blood:
6	chr6:28579846..28585618-chr6:28609150..28616432,10	K562	blood:
7	chr6:28366328..28368330-chr6:28583082..28585639,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12662929	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16894166	0.91[ASN][1000 genomes]
rs16894169	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16894171	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16894191	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713173	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4947335	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55963280	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56227726	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58490223	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62402378	0.82[ASN][1000 genomes]
rs62402392	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62402394	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62406542	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62406553	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6942252	0.83[ASN][1000 genomes]
rs72850099	0.92[ASN][1000 genomes]
rs7746909	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7767144	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9295775	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28580800-28585400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:28583000-28584200	Active TSS	K562	blood
3	chr6:28583400-28584000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
4	chr6:28583400-28584400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr6:28583600-28583800	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:28583600-28583800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
7	chr6:28583600-28583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:28583600-28583800	Weak transcription	Right Atrium	heart
9	chr6:28583600-28584800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:28583600-28584800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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