Variant report

Variant	rs28382864
Chromosome Location	chr9:97400812-97400813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96927010..96929542-chr9:97400485..97402088,2	MCF-7	breast:
2	chr9:97315630..97317501-chr9:97398483..97401293,2	MCF-7	breast:
3	chr9:97399286..97401961-chr9:97487355..97490023,2	MCF-7	breast:
4	chr9:97398090..97401026-chr9:97919610..97921770,2	MCF-7	breast:
5	chr9:97399443..97401665-chr9:97771079..97774076,2	MCF-7	breast:
6	chr9:97316754..97318987-chr9:97400777..97403144,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction
ENSG00000231806	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1998924	1.00[AMR][1000 genomes]
rs28402402	1.00[AMR][1000 genomes]
rs7035812	1.00[AMR][1000 genomes]
rs7039870	1.00[AMR][1000 genomes]
rs7041865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
3	chr9:97395200-97401000	Weak transcription	Colonic Mucosa	Colon
4	chr9:97400200-97402200	Active TSS	Liver	Liver
5	chr9:97400400-97401000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:97400400-97401000	Bivalent/Poised TSS	Fetal Stomach	stomach
7	chr9:97400400-97401600	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr9:97400400-97401800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr9:97400400-97402000	Active TSS	Stomach Mucosa	stomach
10	chr9:97400600-97401000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr9:97400600-97401000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr9:97400600-97401000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr9:97400600-97401000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:97400600-97401000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr9:97400600-97401000	Enhancers	Primary hematopoietic stem cells	blood
16	chr9:97400600-97401000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr9:97400600-97401000	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:97400600-97401000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr9:97400600-97401000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:97400600-97401000	Enhancers	Small Intestine	intestine
21	chr9:97400600-97401200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:97400600-97401200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:97400600-97401200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:97400600-97401400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:97400600-97401400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
26	chr9:97400600-97401400	Flanking Active TSS	Pancreas	Pancrea
27	chr9:97400600-97401600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
28	chr9:97400600-97401600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chr9:97400600-97401600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
30	chr9:97400600-97402200	Bivalent/Poised TSS	Fetal Kidney	kidney
31	chr9:97400600-97402200	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr9:97400600-97402400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:97400800-97401000	Enhancers	Primary B cells from cord blood	blood
34	chr9:97400800-97401000	Enhancers	Primary B cells from peripheral blood	blood
35	chr9:97400800-97401000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr9:97400800-97401000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr9:97400800-97401000	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr9:97400800-97401000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr9:97400800-97401000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:97400800-97401000	Enhancers	Adipose Nuclei	Adipose
41	chr9:97400800-97401000	Enhancers	Esophagus	oesophagus
42	chr9:97400800-97401000	Enhancers	Lung	lung
43	chr9:97400800-97401200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
44	chr9:97400800-97401200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:97400800-97401200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr9:97400800-97401400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
47	chr9:97400800-97401600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr9:97400800-97401800	Flanking Active TSS	Right Ventricle	heart
49	chr9:97400800-97402200	Active TSS	Gastric	stomach

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