Variant report

Variant	rs1998924
Chromosome Location	chr9:97510935-97510936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97510167..97511936-chr9:97513211..97515620,2	K562	blood:
2	chr9:97510928..97513839-chr9:97515556..97518922,4	MCF-7	breast:
3	chr9:97510788..97512507-chr9:97764246..97767153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10512252	1.00[AMR][1000 genomes]
rs16905559	1.00[AMR][1000 genomes]
rs16911849	1.00[AMR][1000 genomes]
rs28382864	1.00[AMR][1000 genomes]
rs28402402	1.00[AMR][1000 genomes]
rs56340483	1.00[AMR][1000 genomes]
rs7035812	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7039870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7041865	1.00[AMR][1000 genomes]
rs73657015	1.00[AMR][1000 genomes]
rs73657016	1.00[AMR][1000 genomes]
rs7852735	1.00[AMR][1000 genomes]
rs7853854	1.00[AMR][1000 genomes]
rs7868690	1.00[AMR][1000 genomes]
rs7875215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97489600-97524800	Weak transcription	Esophagus	oesophagus
2	chr9:97489800-97511000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:97489800-97511400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:97489800-97511600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:97489800-97521600	Weak transcription	Fetal Thymus	thymus
6	chr9:97489800-97522000	Weak transcription	Thymus	Thymus
7	chr9:97489800-97522400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:97490000-97511600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:97490000-97511600	Weak transcription	Osteobl	bone
10	chr9:97490000-97512200	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:97490000-97519400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:97490000-97521600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:97490200-97511000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:97490200-97511000	Weak transcription	NHEK	skin
15	chr9:97490200-97512200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:97490200-97519200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:97490400-97511400	Weak transcription	Hela-S3	cervix
18	chr9:97490400-97511600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:97491000-97511000	Weak transcription	Dnd41	blood
20	chr9:97496400-97511000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:97496800-97511600	Weak transcription	Left Ventricle	heart
22	chr9:97497000-97511400	Weak transcription	Adipose Nuclei	Adipose
23	chr9:97497000-97511600	Weak transcription	Psoas Muscle	Psoas
24	chr9:97497000-97522000	Weak transcription	Placenta	Placenta
25	chr9:97497200-97522200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:97497600-97511400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:97499400-97511600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:97502800-97518800	Weak transcription	K562	blood
29	chr9:97503000-97511000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:97503000-97511400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:97503000-97511400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr9:97503200-97522400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr9:97503800-97518800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:97504400-97511000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:97504400-97511000	Weak transcription	HSMM	muscle
36	chr9:97504400-97522600	Weak transcription	Ovary	ovary
37	chr9:97504600-97511200	Weak transcription	Fetal Kidney	kidney
38	chr9:97504600-97521800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr9:97505200-97522200	Weak transcription	NHLF	lung
40	chr9:97505600-97511000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr9:97505600-97511600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr9:97506000-97511000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:97506000-97511600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:97506200-97511000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:97506200-97512400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr9:97506200-97521600	Weak transcription	Fetal Stomach	stomach
47	chr9:97506200-97533400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr9:97506400-97511000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr9:97506400-97522000	Weak transcription	Lung	lung
50	chr9:97506400-97522200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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