Variant report

Variant	rs7875215
Chromosome Location	chr9:97625537-97625538
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97624375..97626287-chr9:97627314..97629648,2	K562	blood:
2	chr20:52518559..52520827-chr9:97624816..97626567,2	MCF-7	breast:
3	chr9:97624362..97626626-chr9:97681744..97683670,3	MCF-7	breast:
4	chr9:97625448..97628270-chr9:97766242..97768114,2	MCF-7	breast:
5	chr9:97622455..97625860-chr9:97683870..97686784,3	MCF-7	breast:
6	chr9:97624375..97626132-chr9:97681211..97683615,2	MCF-7	breast:
7	chr9:97621507..97626749-chr9:97626893..97633201,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10512252	1.00[AMR][1000 genomes]
rs16905559	1.00[AMR][1000 genomes]
rs16911849	1.00[AMR][1000 genomes]
rs1998924	1.00[AMR][1000 genomes]
rs56340483	1.00[AMR][1000 genomes]
rs7035812	1.00[AMR][1000 genomes]
rs7039870	1.00[AMR][1000 genomes]
rs7041865	1.00[AMR][1000 genomes]
rs73657015	1.00[AMR][1000 genomes]
rs73657016	1.00[AMR][1000 genomes]
rs7852735	1.00[AMR][1000 genomes]
rs7853854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868690	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97605800-97626000	Weak transcription	Right Atrium	heart
2	chr9:97610200-97625800	Weak transcription	Right Ventricle	heart
3	chr9:97612000-97627600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:97612800-97626200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:97614000-97627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:97616600-97629600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:97617000-97627600	Weak transcription	Adipose Nuclei	Adipose
8	chr9:97618600-97628400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:97620600-97627800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:97621800-97626200	Weak transcription	Fetal Heart	heart
11	chr9:97622600-97628200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:97622600-97628600	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:97623600-97627200	Weak transcription	Aorta	Aorta
14	chr9:97623800-97629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:97624000-97626000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:97624200-97626000	Weak transcription	Gastric	stomach
17	chr9:97624200-97626200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:97624200-97627200	Weak transcription	Brain Angular Gyrus	brain
19	chr9:97624200-97627200	Enhancers	A549	lung
20	chr9:97624200-97627600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:97624200-97629400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:97624200-97632800	Weak transcription	Thymus	Thymus
23	chr9:97624400-97625600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:97624400-97626000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:97624400-97627200	Weak transcription	Fetal Kidney	kidney
26	chr9:97624600-97625600	Enhancers	Dnd41	blood
27	chr9:97624600-97626000	Weak transcription	Brain Substantia Nigra	brain
28	chr9:97624600-97626200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr9:97624600-97626200	Weak transcription	Small Intestine	intestine
30	chr9:97624600-97627800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr9:97624600-97628200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr9:97624600-97628200	Weak transcription	HepG2	liver
33	chr9:97624600-97629200	Weak transcription	HMEC	breast
34	chr9:97624600-97629400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr9:97624600-97629600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr9:97624600-97629600	Weak transcription	Esophagus	oesophagus
37	chr9:97624600-97629800	Weak transcription	Colonic Mucosa	Colon
38	chr9:97624800-97626000	Weak transcription	Fetal Lung	lung
39	chr9:97624800-97626000	Weak transcription	Fetal Stomach	stomach
40	chr9:97624800-97626200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:97624800-97626200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:97624800-97626600	Weak transcription	Brain Anterior Caudate	brain
43	chr9:97624800-97626800	Weak transcription	NH-A	brain
44	chr9:97624800-97627200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:97624800-97628000	Weak transcription	Ovary	ovary
46	chr9:97624800-97628200	Weak transcription	Left Ventricle	heart
47	chr9:97624800-97628200	Weak transcription	Psoas Muscle	Psoas
48	chr9:97624800-97632800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr9:97625000-97625800	Weak transcription	Lung	lung
50	chr9:97625000-97626000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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