Variant report

Variant	rs73657016
Chromosome Location	chr9:97696797-97696798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10512252	1.00[AMR][1000 genomes]
rs16905559	1.00[AMR][1000 genomes]
rs16911849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1998924	1.00[AMR][1000 genomes]
rs4647503	1.00[AMR][1000 genomes]
rs4647538	1.00[AMR][1000 genomes]
rs4647542	1.00[AMR][1000 genomes]
rs56340483	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035812	1.00[AMR][1000 genomes]
rs7039870	1.00[AMR][1000 genomes]
rs7041865	1.00[AMR][1000 genomes]
rs73657015	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7852735	1.00[AMR][1000 genomes]
rs7853854	1.00[AMR][1000 genomes]
rs7868690	1.00[AMR][1000 genomes]
rs7875215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:97680400-97698000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:97680600-97700000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:97684200-97699600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:97684800-97711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:97685200-97714600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:97685600-97699600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:97686000-97698800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:97687000-97699400	Weak transcription	Fetal Heart	heart
12	chr9:97687000-97714000	Weak transcription	Thymus	Thymus
13	chr9:97689000-97699400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:97689200-97699600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:97689800-97697200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr9:97689800-97702600	Weak transcription	Fetal Intestine Large	intestine
17	chr9:97690600-97699600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:97691400-97698400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:97691400-97703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:97691600-97698400	Weak transcription	NHLF	lung
21	chr9:97691600-97699400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:97691800-97696800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:97691800-97698200	Weak transcription	Fetal Lung	lung
24	chr9:97691800-97710800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:97692000-97699000	Weak transcription	Brain Anterior Caudate	brain
26	chr9:97692200-97713000	Weak transcription	Primary T cells from cord blood	blood
27	chr9:97692400-97697000	Weak transcription	Spleen	Spleen
28	chr9:97692400-97698400	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:97692400-97698800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:97692400-97699200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:97692400-97699400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:97692400-97699400	Weak transcription	Brain Angular Gyrus	brain
33	chr9:97692400-97699600	Weak transcription	Brain Substantia Nigra	brain
34	chr9:97692400-97707600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr9:97692600-97699400	Weak transcription	HMEC	breast
36	chr9:97693000-97697000	Weak transcription	Fetal Muscle Leg	muscle
37	chr9:97693200-97699200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:97693200-97699200	Weak transcription	Right Ventricle	heart
39	chr9:97693200-97699400	Weak transcription	Esophagus	oesophagus
40	chr9:97693200-97703000	Weak transcription	Pancreas	Pancrea
41	chr9:97693400-97697800	Weak transcription	Lung	lung
42	chr9:97693400-97698000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:97693400-97698400	Weak transcription	Adipose Nuclei	Adipose
44	chr9:97693400-97698800	Weak transcription	Right Atrium	heart
45	chr9:97693400-97698800	Weak transcription	Small Intestine	intestine
46	chr9:97693400-97699200	Weak transcription	HUVEC	blood vessel
47	chr9:97693400-97699600	Weak transcription	Colonic Mucosa	Colon
48	chr9:97693400-97699800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr9:97693400-97712600	Weak transcription	Gastric	stomach
50	chr9:97693800-97698800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links