Variant report

Variant	rs2839160
Chromosome Location	chr21:47652185-47652186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr21:47652086-47653148	HepG2	liver:	n/a	n/a
2	POLR2A	chr21:47650121-47657023	K562	blood:	n/a	n/a
3	POLR2A	chr21:47650719-47652506	HepG2	liver:	n/a	n/a
4	POLR2A	chr21:47651979-47652326	HepG2	liver:	n/a	n/a
5	POLR2A	chr21:47652014-47652289	A549	lung:	n/a	n/a
6	POLR2A	chr21:47651813-47652856	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr21:47651760-47652374	GM12892	blood:	n/a	n/a
8	POLR2A	chr21:47651879-47652367	K562	blood:	n/a	n/a
9	POLR2A	chr21:47651806-47652340	HL-60	blood:	n/a	n/a
10	POLR2A	chr21:47652182-47652202	MCF-7	breast:	n/a	n/a
11	POLR2A	chr21:47651812-47652328	ECC-1	luminal epithelium:	n/a	n/a
12	POLR2A	chr21:47651711-47652262	GM12878	blood:	n/a	n/a
13	POLR2A	chr21:47651781-47652419	GM12892	blood:	n/a	n/a
14	POLR2A	chr21:47651856-47652400	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr21:47651857-47652439	K562	blood:	n/a	n/a
16	POLR2A	chr21:47651237-47653301	GM12891	blood:	n/a	n/a
17	POLR2A	chr21:47651878-47652411	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr21:47651184-47652887	GM12878	blood:	n/a	n/a
19	POLR2A	chr21:47651836-47653191	SK-N-MC	brain:	n/a	n/a
20	POLR2A	chr21:47651981-47652282	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr21:47651621-47652558	PFSK-1	brain:	n/a	n/a
22	POLR2A	chr21:47651067-47652979	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:47637510..47639750-chr21:47649696..47652340,2	K562	blood:
2	chr21:47649909..47652487-chr21:47692841..47694788,2	K562	blood:
3	chr21:47650505..47653057-chr21:47704999..47707978,4	K562	blood:
4	chr21:47646929..47655402-chr21:47657205..47667464,13	MCF-7	breast:
5	chr21:47649475..47654213-chr21:47668159..47671239,4	MCF-7	breast:
6	chr21:47646765..47648918-chr21:47650185..47652427,3	MCF-7	breast:
7	chr21:47651965..47653664-chr21:47792692..47794202,2	K562	blood:
8	chr21:47647765..47652638-chr21:47704055..47705991,5	MCF-7	breast:

No data

Variant related genes	Relation type
LSS	TF binding region
ENSG00000160285	Chromatin interaction
ENSG00000228137	Chromatin interaction
ENSG00000160294	Chromatin interaction
ENSG00000182362	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 21 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs12482209	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[ASN][1000 genomes]
rs13046451	0.92[ASN][1000 genomes]
rs13046494	0.87[ASN][1000 genomes]
rs13049175	0.92[ASN][1000 genomes]
rs13049797	0.87[ASN][1000 genomes]
rs13049893	0.84[ASN][1000 genomes]
rs13050025	0.87[ASN][1000 genomes]
rs13052226	0.86[ASN][1000 genomes]
rs13052376	0.87[ASN][1000 genomes]
rs13052495	0.87[ASN][1000 genomes]
rs13052701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13052806	0.93[ASN][1000 genomes]
rs17176110	0.86[ASN][1000 genomes]
rs17176513	0.83[ASN][1000 genomes]
rs17176520	0.83[ASN][1000 genomes]
rs17183123	0.93[ASN][1000 genomes]
rs2001289	0.88[ASN][1000 genomes]
rs2014276	0.88[ASN][1000 genomes]
rs2032226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2156117	0.93[ASN][1000 genomes]
rs2187118	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2187120	0.81[ASN][1000 genomes]
rs2187121	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2187122	0.82[ASN][1000 genomes]
rs2250213	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs2254524	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2276257	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2277826	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2280955	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2280956	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2280957	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2280958	0.89[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2280959	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2330353	0.88[ASN][1000 genomes]
rs2330408	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2839139	0.89[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2839140	0.83[ASN][1000 genomes]
rs2839141	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2839144	0.83[ASN][1000 genomes]
rs2839146	0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs2839155	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2839157	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2839161	0.98[ASN][1000 genomes]
rs2839167	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2839170	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2839171	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs2839173	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2839174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2839175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2839176	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes]
rs2839178	0.85[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs2839181	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs2839184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2839186	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs2839188	0.82[JPT][hapmap]
rs2839189	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2839191	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2839194	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2839196	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2839197	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2839199	0.85[ASN][1000 genomes]
rs2839200	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2839984	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2968	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs34586434	0.82[ASN][1000 genomes]
rs35679325	0.91[ASN][1000 genomes]
rs3788252	0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[ASN][1000 genomes]
rs4535149	0.90[ASN][1000 genomes]
rs4818828	0.94[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs4818829	0.81[CHB][hapmap]
rs4818832	0.87[ASN][1000 genomes]
rs4819213	0.83[ASN][1000 genomes]
rs4819214	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4819215	0.81[ASN][1000 genomes]
rs4819216	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs4819217	0.93[ASN][1000 genomes]
rs4819218	0.92[ASN][1000 genomes]
rs4819221	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs4819222	0.82[ASN][1000 genomes]
rs4819223	0.85[ASN][1000 genomes]
rs4819225	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4819226	0.81[ASN][1000 genomes]
rs55689527	0.83[ASN][1000 genomes]
rs56840278	0.87[ASN][1000 genomes]
rs56955294	0.87[ASN][1000 genomes]
rs59828751	0.87[ASN][1000 genomes]
rs62212862	0.81[ASN][1000 genomes]
rs62226484	0.83[ASN][1000 genomes]
rs62226486	0.85[ASN][1000 genomes]
rs62226489	0.86[ASN][1000 genomes]
rs6518278	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6518282	0.93[ASN][1000 genomes]
rs6518285	0.93[ASN][1000 genomes]
rs7280110	0.83[ASN][1000 genomes]
rs7282841	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs8128380	0.95[ASN][1000 genomes]
rs914247	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs915803	0.88[ASN][1000 genomes]
rs915804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9717	0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs9976233	0.83[ASN][1000 genomes]
rs9979525	0.82[ASN][1000 genomes]
rs9980536	0.81[JPT][hapmap]
rs9984242	0.93[ASN][1000 genomes]
rs9984708	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9984986	0.92[ASN][1000 genomes]
rs999691	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059230	chr21:46956877-47907990	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
2	nsv544491	chr21:46956877-47907990	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
3	nsv1058472	chr21:47027823-47797326	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
4	nsv544492	chr21:47027823-47797326	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
5	nsv1065959	chr21:47188878-48091343	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	n/a
6	nsv531580	chr21:47221774-48090317	Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	n/a
7	nsv918103	chr21:47297067-48089510	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	n/a
8	nsv869002	chr21:47297268-47963186	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	n/a
9	nsv470910	chr21:47353775-48084988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
10	nsv1059118	chr21:47398331-48090457	Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
11	nsv544494	chr21:47398331-48090457	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
12	nsv934264	chr21:47401083-48090317	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
13	nsv1060978	chr21:47488073-47833640	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	n/a
14	nsv519904	chr21:47583506-47881309	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
15	nsv948761	chr21:47587940-48069930	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	n/a
16	nsv1055239	chr21:47591378-48090317	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	n/a
17	nsv544495	chr21:47591378-48090317	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	n/a
18	nsv933354	chr21:47609029-47851401	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
19	nsv949706	chr21:47625544-48069930	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	n/a
20	nsv914134	chr21:47632995-47712185	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	n/a
21	nsv529496	chr21:47634193-48090317	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	n/a

mRNA abundance (count:21)

SNP	Gene	Cis/trans	Tissue	Source
rs2839160	SPATC1L	cis	Adipose Subcutaneous	GTEx
rs2839160	C21orf57	cis	parietal	SCAN
rs2839160	C21orf56	cis	cerebellum	SCAN
rs2839160	LOC653468	trans	multi-tissue	Pritchard
rs2839160	C21orf56	Cis_1M	lymphoblastoid	RTeQTL
rs2839160	C21orf57	cis	multi-tissue	Pritchard
rs2839160	FTCD	cis	parietal	SCAN
rs2839160	SPATC1L	cis	Whole Blood	GTEx
rs2839160	C21orf56	cis	lymphoblastoid	seeQTL
rs2839160	FTCD	cis	cerebellum	SCAN
rs2839160	SPATC1L	cis	Skin Sun Exposed Lower leg	GTEx
rs2839160	MCM3AP	cis	lymphoblastoid	seeQTL
rs2839160	PCNT	cis	lymphoblastoid	seeQTL
rs2839160	SPATC1L	cis	Muscle Skeletal	GTEx
rs2839160	C21orf56	cis	multi-tissue	Pritchard
rs2839160	C21orf56	cis	parietal	SCAN
rs2839160	YBEY	cis	Esophagus Mucosa	GTEx
rs2839160	YBEY	cis	Esophagus Muscularis	GTEx
rs2839160	SPATC1L	cis	Artery Tibial	GTEx
rs2839160	C21orf57	cis	cerebellum	SCAN
rs2839160	LOC644733	trans	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:47649800-47652400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
2	chr21:47649800-47652800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr21:47649800-47653200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr21:47649800-47654000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr21:47649800-47654200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr21:47649800-47654400	Weak transcription	Aorta	Aorta
7	chr21:47649800-47654400	Weak transcription	Colonic Mucosa	Colon
8	chr21:47649800-47654400	Weak transcription	Right Ventricle	heart
9	chr21:47649800-47701600	Weak transcription	Right Atrium	heart
10	chr21:47650000-47652400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr21:47650000-47652400	Weak transcription	Placenta	Placenta
12	chr21:47650000-47652600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr21:47650000-47652600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr21:47650000-47652600	Weak transcription	HSMMtube	muscle
15	chr21:47650000-47652800	Weak transcription	Adipose Nuclei	Adipose
16	chr21:47650000-47653000	Weak transcription	Fetal Intestine Small	intestine
17	chr21:47650000-47653000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr21:47650000-47653200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr21:47650000-47653200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr21:47650000-47653200	Weak transcription	Pancreas	Pancrea
21	chr21:47650000-47653600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr21:47650000-47653800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr21:47650000-47654000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr21:47650000-47654000	Weak transcription	Brain Angular Gyrus	brain
25	chr21:47650000-47654000	Weak transcription	Brain Substantia Nigra	brain
26	chr21:47650000-47654000	Weak transcription	Colon Smooth Muscle	Colon
27	chr21:47650000-47654200	Weak transcription	Gastric	stomach
28	chr21:47650000-47654200	Weak transcription	Psoas Muscle	Psoas
29	chr21:47650000-47654200	Weak transcription	Spleen	Spleen
30	chr21:47650000-47654400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr21:47650000-47658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr21:47650000-47658600	Weak transcription	Small Intestine	intestine
33	chr21:47650000-47705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr21:47650200-47652200	Weak transcription	Fetal Thymus	thymus
35	chr21:47650200-47652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr21:47650200-47652800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr21:47650200-47653400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr21:47650200-47653600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr21:47650200-47653600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr21:47650200-47653600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr21:47650200-47653600	Weak transcription	Fetal Kidney	kidney
42	chr21:47650200-47653800	Weak transcription	Brain Anterior Caudate	brain
43	chr21:47650200-47653800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr21:47650200-47654000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr21:47650200-47654200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr21:47650200-47654800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr21:47650200-47667000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr21:47650400-47652400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr21:47650400-47653000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr21:47650400-47653200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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