Variant report

Variant	rs915803
Chromosome Location	chr21:47648872-47648873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr21:47648544-47649278	A549	lung:	n/a	chr21:47648912-47648924 chr21:47648912-47648923 chr21:47648913-47648922 chr21:47648830-47648851 chr21:47648914-47648923 chr21:47648914-47648923 chr21:47648913-47648923 chr21:47648912-47648924
2	USF1	chr21:47648753-47648915	K562	blood:	n/a	n/a
3	TBL1XR1	chr21:47648676-47648910	K562	blood:	n/a	n/a
4	SIN3AK20	chr21:47648744-47648973	HepG2	liver:	n/a	n/a
5	MYC	chr21:47647842-47649764	K562	blood:	n/a	chr21:47647962-47647972 chr21:47648926-47648936 chr21:47648909-47648918 chr21:47649337-47649347 chr21:47649404-47649414
6	POLR2A	chr21:47648399-47649379	GM10847	blood:	n/a	n/a
7	SP1	chr21:47648423-47648962	HepG2	liver:	n/a	chr21:47648912-47648924 chr21:47648912-47648923 chr21:47648913-47648922 chr21:47648830-47648851 chr21:47648914-47648923 chr21:47648914-47648923 chr21:47648913-47648923 chr21:47648912-47648924
8	POLR2A	chr21:47648213-47649915	GM12892	blood:	n/a	n/a
9	ZBTB7A	chr21:47648727-47649510	K562	blood:	n/a	chr21:47648873-47648884
10	MXI1	chr21:47648099-47648877	K562	blood:	n/a	n/a
11	POLR2A	chr21:47648242-47649752	GM18951	blood:	n/a	n/a
12	MAZ	chr21:47648186-47649595	Hela-S3	cervix:	n/a	chr21:47648926-47648936 chr21:47648909-47648918 chr21:47649337-47649347 chr21:47649404-47649414
13	POLR2A	chr21:47648296-47649524	GM18526	blood:	n/a	n/a
14	SREBP1	chr21:47648265-47649310	HepG2	liver:	n/a	n/a
15	POLR2A	chr21:47648302-47650042	MCF-7	breast:	n/a	n/a
16	E2F6	chr21:47647915-47649989	K562	blood:	n/a	chr21:47648778-47648787 chr21:47649412-47649421 chr21:47648831-47648840 chr21:47649121-47649135 chr21:47649339-47649351
17	NRF1	chr21:47648632-47648978	H1-hESC	embryonic stem cell:	n/a	chr21:47648777-47648788 chr21:47648777-47648791 chr21:47648777-47648788 chr21:47648774-47648788
18	CHD2	chr21:47648698-47649319	K562	blood:	n/a	chr21:47648960-47648970
19	USF1	chr21:47648750-47648932	HepG2	liver:	n/a	n/a
20	CREB1	chr21:47648172-47649746	HepG2	liver:	n/a	n/a
21	NFYB	chr21:47648224-47649033	K562	blood:	n/a	chr21:47648829-47648844 chr21:47648829-47648844 chr21:47648831-47648841 chr21:47648829-47648843 chr21:47648831-47648841 chr21:47648828-47648840 chr21:47648826-47648841 chr21:47648829-47648842
22	POLR2A	chr21:47648174-47649972	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr21:47648266-47649852	K562	blood:	n/a	n/a
24	FOSL2	chr21:47648709-47648974	HepG2	liver:	n/a	chr21:47648833-47648842 chr21:47648963-47648972
25	MYC	chr21:47647759-47649517	NB4	blood:	n/a	chr21:47647962-47647972 chr21:47648926-47648936 chr21:47648909-47648918 chr21:47649337-47649347 chr21:47649404-47649414
26	TAF1	chr21:47648419-47648955	K562	blood:	n/a	n/a
27	EBF1	chr21:47648424-47649002	GM12878	blood:	n/a	n/a
28	CREB1	chr21:47648429-47649037	H1-hESC	embryonic stem cell:	n/a	n/a
29	EGR1	chr21:47648615-47648920	H1-hESC	embryonic stem cell:	n/a	chr21:47648822-47648833 chr21:47648823-47648832 chr21:47648816-47648838 chr21:47648822-47648832 chr21:47648822-47648832 chr21:47648820-47648834 chr21:47648821-47648834 chr21:47648821-47648834 chr21:47648820-47648835 chr21:47648822-47648833 chr21:47648822-47648831 chr21:47648821-47648834 chr21:47648778-47648787
30	MAX	chr21:47647801-47649516	Hela-S3	cervix:	n/a	chr21:47647962-47647972 chr21:47648926-47648936 chr21:47648909-47648918 chr21:47649337-47649347 chr21:47649404-47649414
31	ZBTB7A	chr21:47648029-47648904	ECC-1	luminal epithelium:	n/a	chr21:47648873-47648884
32	HEY1	chr21:47648350-47648872	HepG2	liver:	n/a	n/a
33	POLR2A	chr21:47648219-47649761	GM18505	blood:	n/a	n/a
34	TEAD4	chr21:47648096-47648980	K562	blood:	n/a	n/a
35	MAX	chr21:47648153-47649003	H1-hESC	embryonic stem cell:	n/a	chr21:47648926-47648936 chr21:47648909-47648918
36	POLR2A	chr21:47648506-47648906	HL-60	blood:	n/a	n/a
37	HDAC2	chr21:47648275-47649025	K562	blood:	n/a	n/a
38	E2F6	chr21:47647923-47649028	H1-hESC	embryonic stem cell:	n/a	chr21:47648778-47648787 chr21:47648831-47648840
39	RCOR1	chr21:47648037-47649316	K562	blood:	n/a	n/a
40	SIN3AK20	chr21:47647452-47649678	MCF-7	breast:	n/a	n/a
41	ELF1	chr21:47648215-47648911	MCF-7	breast:	n/a	n/a
42	EGR1	chr21:47648524-47649412	GM12878	blood:	n/a	chr21:47648822-47648833 chr21:47649366-47649376 chr21:47648823-47648832 chr21:47649334-47649347 chr21:47649365-47649375 chr21:47649337-47649347 chr21:47648924-47648938 chr21:47648956-47648969 chr21:47648816-47648838 chr21:47648822-47648832 chr21:47648822-47648832 chr21:47648820-47648834 chr21:47648821-47648834 chr21:47649328-47649341 chr21:47648821-47648834 chr21:47648820-47648835 chr21:47648822-47648833 chr21:47648822-47648831 chr21:47648957-47648971 chr21:47648821-47648834 chr21:47648778-47648787
43	NFYB	chr21:47648442-47649016	Hela-S3	cervix:	n/a	chr21:47648829-47648844 chr21:47648829-47648844 chr21:47648831-47648841 chr21:47648829-47648843 chr21:47648831-47648841 chr21:47648828-47648840 chr21:47648826-47648841 chr21:47648829-47648842
44	RFX5	chr21:47648662-47649283	Hela-S3	cervix:	n/a	chr21:47648832-47648841
45	USF2	chr21:47648496-47648922	GM12878	blood:	n/a	chr21:47648639-47648650
46	REST	chr21:47648690-47648962	HepG2	liver:	n/a	chr21:47648705-47648715
47	EGR1	chr21:47648492-47649686	K562	blood:	n/a	chr21:47648822-47648833 chr21:47649366-47649376 chr21:47648823-47648832 chr21:47649334-47649347 chr21:47649365-47649375 chr21:47649337-47649347 chr21:47648924-47648938 chr21:47648956-47648969 chr21:47648816-47648838 chr21:47648822-47648832 chr21:47648822-47648832 chr21:47648820-47648834 chr21:47648821-47648834 chr21:47649328-47649341 chr21:47648821-47648834 chr21:47649403-47649413 chr21:47648820-47648835 chr21:47648822-47648833 chr21:47648822-47648831 chr21:47648957-47648971 chr21:47648821-47648834 chr21:47648778-47648787
48	MAX	chr21:47648093-47649007	HepG2	liver:	n/a	chr21:47648926-47648936 chr21:47648909-47648918
49	MAX	chr21:47648001-47649543	A549	lung:	n/a	chr21:47648926-47648936 chr21:47648909-47648918 chr21:47649337-47649347 chr21:47649404-47649414
50	YY1	chr21:47648134-47648976	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:47646324..47649299-chr21:47673752..47676483,2	K562	blood:
2	chr21:47633762..47640190-chr21:47646866..47650293,7	MCF-7	breast:
3	chr21:47645527..47650637-chr21:47703398..47707562,6	MCF-7	breast:
4	chr21:47639961..47644801-chr21:47645631..47650469,7	K562	blood:
5	chr21:47647891..47649801-chr21:47679065..47680838,2	K562	blood:
6	chr21:47646929..47655402-chr21:47657205..47667464,13	MCF-7	breast:
7	chr21:47647621..47651234-chr21:47875652..47881416,7	K562	blood:
8	chr21:47647133..47651621-chr21:47740452..47747290,19	K562	blood:
9	chr21:47646269..47649125-chr21:47743785..47746480,4	MCF-7	breast:
10	chr21:47645020..47650682-chr21:47742361..47746485,6	MCF-7	breast:
11	chr21:47647264..47651365-chr21:47875652..47880068,5	K562	blood:
12	chr21:47648325..47649130-chr21:47878619..47879226,2	K562	blood:
13	chr21:47647133..47651941-chr21:47742263..47745700,6	K562	blood:
14	chr21:47562180..47565264-chr21:47646835..47649294,3	MCF-7	breast:
15	chr21:47647612..47649806-chr21:48055027..48056571,2	K562	blood:
16	chr21:47569776..47574608-chr21:47647325..47651354,5	K562	blood:
17	chr21:47648381..47651139-chr21:47684651..47687035,3	MCF-7	breast:
18	chr21:47639839..47642625-chr21:47644945..47648967,4	K562	blood:
19	chr21:47646904..47649112-chr21:47706461..47708002,3	MCF-7	breast:
20	chr21:47647592..47650436-chr21:47705418..47707523,3	K562	blood:
21	chr21:47601827..47605045-chr21:47646095..47649627,4	MCF-7	breast:
22	chr21:47636662..47640838-chr21:47647206..47649915,5	MCF-7	breast:
23	chr21:47647264..47648921-chr21:47877829..47879532,2	MCF-7	breast:
24	chr21:47647765..47652638-chr21:47704055..47705991,5	MCF-7	breast:

Variant related genes	Relation type
MCM3AP-AS1	TF binding region
LSS	TF binding region
ENSG00000160310	Chromatin interaction
ENSG00000239415	Chromatin interaction
ENSG00000182362	Chromatin interaction
ENSG00000160299	Chromatin interaction
ENSG00000160284	Chromatin interaction
ENSG00000160305	Chromatin interaction
ENSG00000237338	Chromatin interaction
ENSG00000160298	Chromatin interaction
ENSG00000228137	Chromatin interaction
ENSG00000228404	Chromatin interaction
ENSG00000160282	Chromatin interaction
ENSG00000223901	Chromatin interaction
ENSG00000160294	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12482209	0.86[ASN][1000 genomes]
rs13046451	0.80[ASN][1000 genomes]
rs13049175	0.80[ASN][1000 genomes]
rs13052701	0.87[ASN][1000 genomes]
rs13052806	0.82[ASN][1000 genomes]
rs17183123	0.83[ASN][1000 genomes]
rs2032226	0.81[ASN][1000 genomes]
rs2156117	0.83[ASN][1000 genomes]
rs2250213	0.83[ASN][1000 genomes]
rs2277826	0.80[ASN][1000 genomes]
rs2280955	0.83[ASN][1000 genomes]
rs2280956	0.80[ASN][1000 genomes]
rs2280957	0.80[ASN][1000 genomes]
rs2280958	0.80[ASN][1000 genomes]
rs2280959	0.80[ASN][1000 genomes]
rs2839155	0.80[ASN][1000 genomes]
rs2839157	0.83[ASN][1000 genomes]
rs2839160	0.88[ASN][1000 genomes]
rs2839161	0.88[ASN][1000 genomes]
rs2839167	0.86[ASN][1000 genomes]
rs2839170	0.84[ASN][1000 genomes]
rs2839171	0.83[ASN][1000 genomes]
rs2839173	0.83[ASN][1000 genomes]
rs2839174	0.83[ASN][1000 genomes]
rs2839175	0.81[ASN][1000 genomes]
rs2839176	0.80[ASN][1000 genomes]
rs2839984	0.83[ASN][1000 genomes]
rs35679325	0.81[ASN][1000 genomes]
rs3788252	0.90[ASN][1000 genomes]
rs4819217	0.83[ASN][1000 genomes]
rs4819218	0.80[ASN][1000 genomes]
rs6518278	0.83[ASN][1000 genomes]
rs6518282	0.81[ASN][1000 genomes]
rs6518285	0.82[ASN][1000 genomes]
rs8128380	0.86[ASN][1000 genomes]
rs915804	0.89[ASN][1000 genomes]
rs9984242	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9984708	0.88[ASN][1000 genomes]
rs9984986	0.82[ASN][1000 genomes]
rs999691	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059230	chr21:46956877-47907990	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
2	nsv544491	chr21:46956877-47907990	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
3	nsv1058472	chr21:47027823-47797326	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
4	nsv544492	chr21:47027823-47797326	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
5	nsv1065959	chr21:47188878-48091343	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	n/a
6	nsv531580	chr21:47221774-48090317	Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	n/a
7	nsv914079	chr21:47243074-47650362	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	n/a
8	nsv918103	chr21:47297067-48089510	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	n/a
9	nsv869002	chr21:47297268-47963186	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	n/a
10	nsv470910	chr21:47353775-48084988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
11	nsv1059118	chr21:47398331-48090457	Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
12	nsv544494	chr21:47398331-48090457	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
13	nsv934264	chr21:47401083-48090317	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
14	nsv1060978	chr21:47488073-47833640	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	n/a
15	nsv914101	chr21:47491014-47650362	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	n/a
16	nsv914116	chr21:47535248-47650362	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
17	nsv519904	chr21:47583506-47881309	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
18	nsv948761	chr21:47587940-48069930	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	n/a
19	nsv1055239	chr21:47591378-48090317	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	n/a
20	nsv544495	chr21:47591378-48090317	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	n/a
21	nsv933354	chr21:47609029-47851401	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
22	nsv949706	chr21:47625544-48069930	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	n/a
23	nsv914134	chr21:47632995-47712185	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	n/a
24	nsv529496	chr21:47634193-48090317	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	n/a
25	esv3322089	chr21:47647549-47650497	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
26	esv3377874	chr21:47647774-47650272	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
27	esv3436984	chr21:47648374-47649822	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs915803	C21orf56	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:47646200-47649800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr21:47646600-47649600	Active TSS	NHLF	lung
3	chr21:47646600-47649800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr21:47646800-47649600	Active TSS	HMEC	breast
5	chr21:47647000-47649800	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr21:47647000-47650000	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr21:47647000-47650000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr21:47647000-47650200	Active TSS	Fetal Kidney	kidney
9	chr21:47647000-47650400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr21:47647200-47649600	Active TSS	Aorta	Aorta
11	chr21:47647200-47649600	Active TSS	Gastric	stomach
12	chr21:47647200-47649800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr21:47647200-47649800	Active TSS	NHDF-Ad	bronchial
14	chr21:47647400-47649600	Active TSS	Primary T cells from cord blood	blood
15	chr21:47647400-47649800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr21:47647400-47649800	Active TSS	H9 Cell Line	embryonic stem cell
17	chr21:47647400-47649800	Active TSS	HepG2	liver
18	chr21:47647400-47650000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr21:47647600-47649200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr21:47647600-47649200	Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr21:47647600-47649200	Active TSS	Muscle Satellite Cultured Cells	--
22	chr21:47647600-47649200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr21:47647600-47649200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr21:47647600-47649400	Active TSS	H1 Cell Line	embryonic stem cell
25	chr21:47647600-47649400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr21:47647600-47649400	Active TSS	Brain Cingulate Gyrus	brain
27	chr21:47647600-47649400	Active TSS	Colonic Mucosa	Colon
28	chr21:47647600-47649400	Active TSS	Lung	lung
29	chr21:47647600-47649400	Active TSS	Pancreas	Pancrea
30	chr21:47647600-47649400	Active TSS	Right Ventricle	heart
31	chr21:47647600-47649400	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr21:47647600-47649600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr21:47647600-47649600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr21:47647600-47649600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr21:47647600-47649600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr21:47647600-47649600	Active TSS	Left Ventricle	heart
37	chr21:47647600-47649600	Active TSS	Ovary	ovary
38	chr21:47647600-47649600	Active TSS	Rectal Smooth Muscle	rectum
39	chr21:47647600-47649600	Active TSS	Right Atrium	heart
40	chr21:47647600-47649600	Active TSS	Stomach Mucosa	stomach
41	chr21:47647600-47649600	Active TSS	GM12878-XiMat	blood
42	chr21:47647600-47649600	Active TSS	NHEK	skin
43	chr21:47647600-47649800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr21:47647600-47649800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr21:47647600-47649800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr21:47647600-47649800	Active TSS	Brain Angular Gyrus	brain
47	chr21:47647600-47649800	Active TSS	Esophagus	oesophagus
48	chr21:47647600-47649800	Active TSS	K562	blood
49	chr21:47647600-47650000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr21:47647600-47650000	Active TSS	HSMM	muscle

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