Variant report

Variant	rs28393124
Chromosome Location	chr4:91116680-91116681
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91048424..91050386-chr4:91115679..91118506,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184305	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10005084	1.00[EUR][1000 genomes]
rs10009936	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10015971	1.00[EUR][1000 genomes]
rs10016078	1.00[EUR][1000 genomes]
rs10022446	1.00[EUR][1000 genomes]
rs10024732	1.00[EUR][1000 genomes]
rs11930761	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11931183	1.00[EUR][1000 genomes]
rs11931220	1.00[EUR][1000 genomes]
rs11932221	1.00[EUR][1000 genomes]
rs11933080	1.00[EUR][1000 genomes]
rs11933968	1.00[EUR][1000 genomes]
rs11935964	1.00[EUR][1000 genomes]
rs11936096	1.00[EUR][1000 genomes]
rs11936121	1.00[EUR][1000 genomes]
rs11938553	1.00[EUR][1000 genomes]
rs11938585	1.00[EUR][1000 genomes]
rs11938724	1.00[EUR][1000 genomes]
rs11939882	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11940424	1.00[EUR][1000 genomes]
rs11941322	1.00[EUR][1000 genomes]
rs11943050	1.00[EUR][1000 genomes]
rs11943059	1.00[EUR][1000 genomes]
rs11943332	1.00[EUR][1000 genomes]
rs11944958	1.00[EUR][1000 genomes]
rs11945084	1.00[EUR][1000 genomes]
rs11945094	1.00[EUR][1000 genomes]
rs11945262	1.00[EUR][1000 genomes]
rs11946053	1.00[EUR][1000 genomes]
rs11946195	1.00[EUR][1000 genomes]
rs11947703	1.00[EUR][1000 genomes]
rs1431023	1.00[EUR][1000 genomes]
rs2035127	1.00[EUR][1000 genomes]
rs28375346	1.00[EUR][1000 genomes]
rs28436789	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28480181	1.00[EUR][1000 genomes]
rs28483538	1.00[EUR][1000 genomes]
rs28509205	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28520612	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28566626	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28592243	1.00[EUR][1000 genomes]
rs28612327	1.00[EUR][1000 genomes]
rs28628195	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28710453	1.00[EUR][1000 genomes]
rs28711243	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28812580	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28870519	1.00[EUR][1000 genomes]
rs35057072	1.00[EUR][1000 genomes]
rs56719283	1.00[EUR][1000 genomes]
rs57759641	1.00[EUR][1000 genomes]
rs57853206	1.00[EUR][1000 genomes]
rs60438266	1.00[EUR][1000 genomes]
rs60654585	1.00[EUR][1000 genomes]
rs60666775	1.00[EUR][1000 genomes]
rs61529592	1.00[EUR][1000 genomes]
rs6813228	1.00[EUR][1000 genomes]
rs6821342	1.00[EUR][1000 genomes]
rs6821731	1.00[EUR][1000 genomes]
rs6822231	1.00[EUR][1000 genomes]
rs6828014	1.00[EUR][1000 genomes]
rs6828199	1.00[EUR][1000 genomes]
rs6831098	1.00[EUR][1000 genomes]
rs6831305	1.00[EUR][1000 genomes]
rs6832140	1.00[EUR][1000 genomes]
rs6848616	1.00[EUR][1000 genomes]
rs6853618	1.00[EUR][1000 genomes]
rs6853854	1.00[EUR][1000 genomes]
rs6853970	1.00[EUR][1000 genomes]
rs6854780	1.00[EUR][1000 genomes]
rs72877722	1.00[EUR][1000 genomes]
rs72877723	1.00[EUR][1000 genomes]
rs72877725	1.00[EUR][1000 genomes]
rs72877727	1.00[EUR][1000 genomes]
rs72877729	1.00[EUR][1000 genomes]
rs72877730	1.00[EUR][1000 genomes]
rs72877732	1.00[EUR][1000 genomes]
rs72877735	1.00[EUR][1000 genomes]
rs72877737	1.00[EUR][1000 genomes]
rs72877738	1.00[EUR][1000 genomes]
rs72877741	1.00[EUR][1000 genomes]
rs72877744	1.00[EUR][1000 genomes]
rs72877745	1.00[EUR][1000 genomes]
rs72877746	1.00[EUR][1000 genomes]
rs72877747	1.00[EUR][1000 genomes]
rs72877748	1.00[EUR][1000 genomes]
rs72877751	1.00[EUR][1000 genomes]
rs72877752	1.00[EUR][1000 genomes]
rs72877754	1.00[EUR][1000 genomes]
rs72877758	1.00[EUR][1000 genomes]
rs72877759	1.00[EUR][1000 genomes]
rs72877777	1.00[EUR][1000 genomes]
rs72877779	1.00[EUR][1000 genomes]
rs72877781	1.00[EUR][1000 genomes]
rs72877783	1.00[EUR][1000 genomes]
rs72877785	1.00[EUR][1000 genomes]
rs72877787	1.00[EUR][1000 genomes]
rs72877789	1.00[EUR][1000 genomes]
rs72877790	1.00[EUR][1000 genomes]
rs72877791	1.00[EUR][1000 genomes]
rs72877792	1.00[EUR][1000 genomes]
rs72877796	1.00[EUR][1000 genomes]
rs72877797	1.00[EUR][1000 genomes]
rs72877798	1.00[EUR][1000 genomes]
rs72877799	1.00[EUR][1000 genomes]
rs72879723	1.00[EUR][1000 genomes]
rs72879731	1.00[EUR][1000 genomes]
rs72879733	1.00[EUR][1000 genomes]
rs72879736	1.00[EUR][1000 genomes]
rs72879737	1.00[EUR][1000 genomes]
rs72879745	1.00[EUR][1000 genomes]
rs72879747	1.00[EUR][1000 genomes]
rs7356145	1.00[EUR][1000 genomes]
rs7356351	1.00[EUR][1000 genomes]
rs7657216	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7657924	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7675868	1.00[EUR][1000 genomes]
rs7676068	1.00[EUR][1000 genomes]
rs7676688	1.00[EUR][1000 genomes]
rs7698374	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9884304	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv879537	chr4:90883047-91165346	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv830006	chr4:90971656-91186340	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91109200-91117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:91109200-91118800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:91109400-91119000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:91116200-91117000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:91116400-91116800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:91116400-91119000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links