Variant report

Variant	rs28592243
Chromosome Location	chr4:91229430-91229431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr4:91229401-91229622	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:15280129..15280852-chr4:91229350..91230248,2	MCF-7	breast:

Variant related genes	Relation type
CCSER1	TF binding region

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10005084	1.00[EUR][1000 genomes]
rs10009936	1.00[EUR][1000 genomes]
rs10015971	1.00[EUR][1000 genomes]
rs10016078	1.00[EUR][1000 genomes]
rs10022446	1.00[EUR][1000 genomes]
rs10024732	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11930761	1.00[EUR][1000 genomes]
rs11931183	1.00[EUR][1000 genomes]
rs11931220	1.00[EUR][1000 genomes]
rs11932221	1.00[EUR][1000 genomes]
rs11933080	1.00[EUR][1000 genomes]
rs11933968	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935964	1.00[EUR][1000 genomes]
rs11936096	1.00[EUR][1000 genomes]
rs11936121	1.00[EUR][1000 genomes]
rs11938553	1.00[EUR][1000 genomes]
rs11938585	1.00[EUR][1000 genomes]
rs11938724	1.00[EUR][1000 genomes]
rs11939882	1.00[EUR][1000 genomes]
rs11940424	1.00[EUR][1000 genomes]
rs11941322	1.00[EUR][1000 genomes]
rs11943050	1.00[EUR][1000 genomes]
rs11943059	1.00[EUR][1000 genomes]
rs11943332	1.00[EUR][1000 genomes]
rs11944958	1.00[EUR][1000 genomes]
rs11945084	1.00[EUR][1000 genomes]
rs11945094	1.00[EUR][1000 genomes]
rs11945262	1.00[EUR][1000 genomes]
rs11946053	1.00[EUR][1000 genomes]
rs11946195	1.00[EUR][1000 genomes]
rs11947703	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1431023	1.00[EUR][1000 genomes]
rs2035126	0.82[AFR][1000 genomes]
rs2035127	1.00[EUR][1000 genomes]
rs28375346	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28393124	1.00[EUR][1000 genomes]
rs28436789	1.00[EUR][1000 genomes]
rs28480181	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483538	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28509205	1.00[EUR][1000 genomes]
rs28520612	1.00[EUR][1000 genomes]
rs28566626	1.00[EUR][1000 genomes]
rs28612327	1.00[EUR][1000 genomes]
rs28628195	1.00[EUR][1000 genomes]
rs28710453	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28711243	1.00[EUR][1000 genomes]
rs28812580	1.00[EUR][1000 genomes]
rs28870519	1.00[EUR][1000 genomes]
rs35057072	1.00[EUR][1000 genomes]
rs56719283	1.00[EUR][1000 genomes]
rs56985724	0.85[ASN][1000 genomes]
rs57759641	1.00[EUR][1000 genomes]
rs57853206	1.00[EUR][1000 genomes]
rs58727136	1.00[ASN][1000 genomes]
rs59115830	0.85[ASN][1000 genomes]
rs60438266	1.00[EUR][1000 genomes]
rs60654585	1.00[EUR][1000 genomes]
rs60666775	1.00[EUR][1000 genomes]
rs60925511	1.00[ASN][1000 genomes]
rs61529592	1.00[EUR][1000 genomes]
rs6813228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6820951	1.00[ASN][1000 genomes]
rs6821342	1.00[EUR][1000 genomes]
rs6821731	1.00[EUR][1000 genomes]
rs6822231	1.00[EUR][1000 genomes]
rs6828014	1.00[EUR][1000 genomes]
rs6828199	1.00[EUR][1000 genomes]
rs6831098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6831305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6832140	1.00[EUR][1000 genomes]
rs6848616	1.00[EUR][1000 genomes]
rs6853618	1.00[EUR][1000 genomes]
rs6853854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854651	1.00[ASN][1000 genomes]
rs6854780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877722	1.00[EUR][1000 genomes]
rs72877723	1.00[EUR][1000 genomes]
rs72877725	1.00[EUR][1000 genomes]
rs72877727	1.00[EUR][1000 genomes]
rs72877729	1.00[EUR][1000 genomes]
rs72877730	1.00[EUR][1000 genomes]
rs72877732	1.00[EUR][1000 genomes]
rs72877735	1.00[EUR][1000 genomes]
rs72877737	1.00[EUR][1000 genomes]
rs72877738	1.00[EUR][1000 genomes]
rs72877741	1.00[EUR][1000 genomes]
rs72877744	1.00[EUR][1000 genomes]
rs72877745	1.00[EUR][1000 genomes]
rs72877746	1.00[EUR][1000 genomes]
rs72877747	1.00[EUR][1000 genomes]
rs72877748	1.00[EUR][1000 genomes]
rs72877751	1.00[EUR][1000 genomes]
rs72877752	1.00[EUR][1000 genomes]
rs72877754	1.00[EUR][1000 genomes]
rs72877758	1.00[EUR][1000 genomes]
rs72877759	1.00[EUR][1000 genomes]
rs72877777	1.00[EUR][1000 genomes]
rs72877779	1.00[EUR][1000 genomes]
rs72877781	1.00[EUR][1000 genomes]
rs72877783	1.00[EUR][1000 genomes]
rs72877785	1.00[EUR][1000 genomes]
rs72877787	1.00[EUR][1000 genomes]
rs72877789	1.00[EUR][1000 genomes]
rs72877790	1.00[EUR][1000 genomes]
rs72877791	1.00[EUR][1000 genomes]
rs72877792	1.00[EUR][1000 genomes]
rs72877796	1.00[EUR][1000 genomes]
rs72877797	1.00[EUR][1000 genomes]
rs72877798	1.00[EUR][1000 genomes]
rs72877799	1.00[EUR][1000 genomes]
rs72879723	1.00[EUR][1000 genomes]
rs72879731	1.00[EUR][1000 genomes]
rs72879733	1.00[EUR][1000 genomes]
rs72879736	1.00[EUR][1000 genomes]
rs72879737	1.00[EUR][1000 genomes]
rs72879745	1.00[EUR][1000 genomes]
rs72879747	1.00[EUR][1000 genomes]
rs72879776	1.00[ASN][1000 genomes]
rs72879791	1.00[ASN][1000 genomes]
rs72881611	1.00[ASN][1000 genomes]
rs72881639	1.00[ASN][1000 genomes]
rs72881640	1.00[ASN][1000 genomes]
rs72881647	1.00[ASN][1000 genomes]
rs72881666	0.84[ASN][1000 genomes]
rs72881683	1.00[ASN][1000 genomes]
rs72883335	0.85[ASN][1000 genomes]
rs72883340	0.85[ASN][1000 genomes]
rs7356145	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356351	1.00[EUR][1000 genomes]
rs7657216	1.00[EUR][1000 genomes]
rs7657924	1.00[EUR][1000 genomes]
rs7675868	1.00[EUR][1000 genomes]
rs7676068	1.00[EUR][1000 genomes]
rs7676688	1.00[EUR][1000 genomes]
rs7679619	0.85[ASN][1000 genomes]
rs7698374	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879542	chr4:91185206-91287204	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91222200-91244000	Weak transcription	Pancreas	Pancrea
2	chr4:91227200-91239000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:91227800-91230000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:91228000-91234600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:91228200-91244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:91228400-91245000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr4:91228600-91232600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:91228600-91249600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:91229400-91229800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:91229400-91229800	Strong transcription	Fetal Intestine Large	intestine

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