Variant report

Variant	rs72879791
Chromosome Location	chr4:91238316-91238317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11933968	1.00[ASN][1000 genomes]
rs11947703	0.84[ASN][1000 genomes]
rs28375346	0.92[ASN][1000 genomes]
rs28480181	1.00[ASN][1000 genomes]
rs28483538	1.00[ASN][1000 genomes]
rs28592243	1.00[ASN][1000 genomes]
rs28710453	1.00[ASN][1000 genomes]
rs56985724	0.85[ASN][1000 genomes]
rs58727136	1.00[ASN][1000 genomes]
rs59115830	0.85[ASN][1000 genomes]
rs60925511	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6820951	1.00[ASN][1000 genomes]
rs6831305	0.86[ASN][1000 genomes]
rs6853854	1.00[ASN][1000 genomes]
rs6853970	1.00[ASN][1000 genomes]
rs6854651	1.00[ASN][1000 genomes]
rs6854780	1.00[ASN][1000 genomes]
rs72879776	1.00[ASN][1000 genomes]
rs72881611	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881639	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881640	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881647	1.00[ASN][1000 genomes]
rs72881666	0.84[ASN][1000 genomes]
rs72881683	1.00[ASN][1000 genomes]
rs72883335	0.85[ASN][1000 genomes]
rs72883340	0.85[ASN][1000 genomes]
rs7356145	1.00[ASN][1000 genomes]
rs7679619	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879542	chr4:91185206-91287204	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91222200-91244000	Weak transcription	Pancreas	Pancrea
2	chr4:91227200-91239000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:91228200-91244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:91228400-91245000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:91228600-91249600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:91229800-91238800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:91229800-91246200	Weak transcription	Fetal Intestine Large	intestine
8	chr4:91230800-91239200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:91231800-91249600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:91233400-91244000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:91235000-91243400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:91235000-91244800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:91237000-91238600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:91237400-91238600	Enhancers	Hela-S3	cervix
15	chr4:91237800-91238400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:91237800-91238800	Enhancers	NH-A	brain
17	chr4:91237800-91239000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:91237800-91248200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr4:91238000-91238800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:91238000-91239000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:91238000-91240200	Enhancers	HUVEC	blood vessel
22	chr4:91238000-91240200	Enhancers	Osteobl	bone
23	chr4:91238000-91249600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:91238200-91239000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:91238200-91239000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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