Variant report

Variant	rs60925511
Chromosome Location	chr4:91248757-91248758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11933968	1.00[ASN][1000 genomes]
rs11947703	0.84[ASN][1000 genomes]
rs28375346	0.92[ASN][1000 genomes]
rs28480181	1.00[ASN][1000 genomes]
rs28483538	1.00[ASN][1000 genomes]
rs28592243	1.00[ASN][1000 genomes]
rs28710453	1.00[ASN][1000 genomes]
rs56985724	0.85[ASN][1000 genomes]
rs58727136	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59115830	0.85[ASN][1000 genomes]
rs6820951	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6831305	0.86[ASN][1000 genomes]
rs6853854	1.00[ASN][1000 genomes]
rs6853970	1.00[ASN][1000 genomes]
rs6854651	1.00[ASN][1000 genomes]
rs6854780	1.00[ASN][1000 genomes]
rs72879776	1.00[ASN][1000 genomes]
rs72879791	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881611	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881639	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881640	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881647	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881666	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72881683	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883335	0.85[ASN][1000 genomes]
rs72883340	0.85[ASN][1000 genomes]
rs7356145	1.00[ASN][1000 genomes]
rs7679619	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879542	chr4:91185206-91287204	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91228600-91249600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:91231800-91249600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:91238000-91249600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:91239400-91249600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:91239600-91249600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:91242800-91249800	Weak transcription	Left Ventricle	heart
7	chr4:91244600-91249400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:91244600-91249600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:91244600-91249600	Weak transcription	Gastric	stomach
10	chr4:91244600-91270200	Weak transcription	Pancreas	Pancrea
11	chr4:91244800-91249000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:91244800-91249800	Weak transcription	Fetal Stomach	stomach
13	chr4:91248400-91249200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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