Variant report

Variant	rs28394019
Chromosome Location	chr4:21980111-21980112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10005683	1.00[ASN][1000 genomes]
rs10014279	1.00[AMR][1000 genomes]
rs10020611	1.00[AMR][1000 genomes]
rs10032270	1.00[ASN][1000 genomes]
rs11943210	1.00[ASN][1000 genomes]
rs12108644	0.83[AMR][1000 genomes]
rs13139162	0.83[AMR][1000 genomes]
rs16872186	1.00[ASN][1000 genomes]
rs28498941	1.00[AMR][1000 genomes]
rs28569901	1.00[AMR][1000 genomes]
rs34727810	1.00[ASN][1000 genomes]
rs4697262	0.83[AMR][1000 genomes]
rs6448101	0.94[ASN][1000 genomes]
rs6847884	0.94[ASN][1000 genomes]
rs73800657	1.00[ASN][1000 genomes]
rs73803721	0.83[AMR][1000 genomes]
rs7692763	0.94[ASN][1000 genomes]
rs7699866	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21980000-21984000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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