Variant report

Variant	rs6448101
Chromosome Location	chr4:21948635-21948636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10005683	0.94[ASN][1000 genomes]
rs10030447	1.00[JPT][hapmap]
rs10032270	0.94[ASN][1000 genomes]
rs11943210	0.94[ASN][1000 genomes]
rs16872186	0.94[ASN][1000 genomes]
rs28394019	0.94[ASN][1000 genomes]
rs28485597	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34727810	0.94[ASN][1000 genomes]
rs4235293	0.86[EUR][1000 genomes]
rs6448103	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs6847752	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs6847884	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848041	0.87[EUR][1000 genomes]
rs73800657	0.94[ASN][1000 genomes]
rs7692763	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699866	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990092	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21947600-21950800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr4:21948000-21951400	Active TSS	Brain Anterior Caudate	brain
3	chr4:21948600-21948800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:21948600-21948800	Flanking Active TSS	Ovary	ovary
5	chr4:21948600-21949400	Active TSS	Brain Cingulate Gyrus	brain
6	chr4:21948600-21950000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
7	chr4:21948600-21950000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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