Variant report

Variant	rs28396145
Chromosome Location	chr3:17041620-17041621
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17039629..17042564-chr3:17044949..17047142,2	MCF-7	breast:
2	chr3:17040139..17042638-chr3:17051361..17054318,2	K562	blood:
3	chr3:17039544..17042742-chr3:17044193..17046929,5	K562	blood:

Variant related genes	Relation type
ENSG00000154822	Chromatin interaction

rs_ID	r²[population]
rs13315007	1.00[AFR][1000 genomes]
rs9844511	1.00[AFR][1000 genomes]
rs9857245	1.00[AFR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17029400-17042200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:17034400-17044800	Weak transcription	Aorta	Aorta
3	chr3:17035000-17047200	Weak transcription	Ovary	ovary
4	chr3:17037000-17053200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:17037600-17050800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:17037800-17044800	Weak transcription	Thymus	Thymus
7	chr3:17038000-17044800	Weak transcription	Right Atrium	heart
8	chr3:17038000-17044800	Weak transcription	Right Ventricle	heart
9	chr3:17038000-17044800	Weak transcription	Spleen	Spleen
10	chr3:17038000-17047800	Weak transcription	Gastric	stomach
11	chr3:17038200-17045000	Weak transcription	Psoas Muscle	Psoas
12	chr3:17038800-17041800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:17039600-17044600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:17040000-17041800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr3:17040200-17044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:17040200-17051000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:17040200-17051200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr3:17041200-17042200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:17041200-17043800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr3:17041200-17044000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr3:17041200-17044800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:17041200-17044800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:17041200-17045400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:17041200-17051400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:17041600-17044200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr3:17041600-17044600	Weak transcription	Fetal Heart	heart

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