Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144235945..144238860-chr4:144239571..144241521,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10025700	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11941277	1.00[ASN][1000 genomes]
rs11941986	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942185	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12331265	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13105156	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13133540	0.81[EUR][1000 genomes]
rs13146448	0.81[AMR][1000 genomes]
rs182467	1.00[ASN][1000 genomes]
rs188521	1.00[ASN][1000 genomes]
rs214426	1.00[ASN][1000 genomes]
rs2323079	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28408110	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28846534	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs300954	1.00[ASN][1000 genomes]
rs300955	1.00[ASN][1000 genomes]
rs34420992	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522027	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535824	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536660	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826079	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9990577	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9993972	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144235000-144247000	Weak transcription	Right Atrium	heart
2	chr4:144235600-144237400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:144235600-144238400	Weak transcription	Fetal Heart	heart
4	chr4:144235600-144241000	Weak transcription	Left Ventricle	heart

Quick Search: