Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10025700	0.85[AMR][1000 genomes]
rs11941277	1.00[ASN][1000 genomes]
rs11941986	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942185	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12331265	0.89[EUR][1000 genomes]
rs13105156	0.85[AMR][1000 genomes]
rs13133540	0.81[AMR][1000 genomes]
rs13146448	0.85[AMR][1000 genomes]
rs17017563	0.90[AFR][1000 genomes]
rs182467	1.00[ASN][1000 genomes]
rs188521	1.00[ASN][1000 genomes]
rs214426	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2323079	0.83[EUR][1000 genomes]
rs28397211	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408110	0.85[AMR][1000 genomes]
rs28846534	0.85[AMR][1000 genomes]
rs300954	1.00[ASN][1000 genomes]
rs300955	1.00[ASN][1000 genomes]
rs522027	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535824	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536660	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826079	0.85[AMR][1000 genomes]
rs9990577	0.85[AMR][1000 genomes]
rs9993972	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144229400-144231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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