Variant report

Variant	rs28397699
Chromosome Location	chr4:103143804-103143805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10010108	1.00[EUR][1000 genomes]
rs10011987	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10021755	1.00[EUR][1000 genomes]
rs17032321	0.82[EUR][1000 genomes]
rs28437963	0.90[EUR][1000 genomes]
rs28760529	0.90[EUR][1000 genomes]
rs28802702	0.82[EUR][1000 genomes]
rs72922981	0.86[EUR][1000 genomes]
rs73836536	0.89[EUR][1000 genomes]
rs73836538	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103143600-103144000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:103143800-103144000	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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