Variant report

Variant	rs73836536
Chromosome Location	chr4:103141168-103141169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10010108	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10011987	0.85[EUR][1000 genomes]
rs10021755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17032290	0.91[AMR][1000 genomes]
rs28397699	0.89[EUR][1000 genomes]
rs56072709	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72922981	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836538	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73836548	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103139600-103141200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:103139600-103141400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:103140400-103143600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:103140600-103143400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:103140800-103141400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:103140800-103141600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:103141000-103141400	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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