Variant report

Variant	rs28402899
Chromosome Location	chr14:69494281-69494282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10129883	0.85[AMR][1000 genomes]
rs10143517	0.85[AFR][1000 genomes]
rs10146434	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10150736	0.85[AMR][1000 genomes]
rs12323321	0.85[AMR][1000 genomes]
rs28522776	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28854218	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57723249	0.85[AMR][1000 genomes]
rs74059868	0.85[AMR][1000 genomes]
rs74059870	0.85[AMR][1000 genomes]
rs908484	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69486000-69503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69494000-69494400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:69494200-69494600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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