Variant report

Variant	rs908484
Chromosome Location	chr14:69511730-69511731
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69511704..69514536-chr14:69514659..69516303,2	K562	blood:
2	chr14:69443082..69446531-chr14:69508749..69512052,3	MCF-7	breast:
3	chr14:69510523..69515043-chr14:69515218..69517910,6	MCF-7	breast:
4	chr14:69509516..69511867-chr14:69516785..69518718,2	K562	blood:
5	chr14:69509691..69512207-chr14:69526446..69528305,2	MCF-7	breast:
6	chr14:69510349..69511857-chr14:69516882..69518965,2	K562	blood:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10129883	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10134594	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs10134889	0.86[ASW][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes]
rs10143517	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10145145	0.85[AMR][1000 genomes]
rs10146434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150736	0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10498526	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs12323321	1.00[AMR][1000 genomes]
rs28402899	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28522776	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28710350	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs28854218	0.84[AFR][1000 genomes]
rs57723249	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61160887	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7145079	1.00[MEX][hapmap]
rs74059868	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74059870	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69508600-69512200	Enhancers	HSMMtube	muscle
2	chr14:69508600-69513200	Enhancers	Fetal Intestine Small	intestine
3	chr14:69508600-69513400	Enhancers	Fetal Intestine Large	intestine
4	chr14:69508800-69513000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:69508800-69513800	Enhancers	Brain Hippocampus Middle	brain
6	chr14:69508800-69513800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:69508800-69513800	Enhancers	NHDF-Ad	bronchial
8	chr14:69508800-69514600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:69508800-69516600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:69508800-69518000	Enhancers	Fetal Muscle Leg	muscle
11	chr14:69509000-69511800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:69509000-69513800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr14:69509200-69512800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr14:69509400-69512400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:69509400-69513800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr14:69509400-69513800	Enhancers	Ovary	ovary
17	chr14:69509400-69514000	Enhancers	NH-A	brain
18	chr14:69509600-69512000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:69509600-69512200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:69509600-69512400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:69509600-69513000	Enhancers	Pancreas	Pancrea
22	chr14:69509600-69513400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:69509600-69513800	Enhancers	Colonic Mucosa	Colon
24	chr14:69509600-69513800	Enhancers	Esophagus	oesophagus
25	chr14:69509600-69513800	Enhancers	Fetal Muscle Trunk	muscle
26	chr14:69509600-69513800	Enhancers	Psoas Muscle	Psoas
27	chr14:69509600-69513800	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr14:69509600-69513800	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:69509600-69514400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:69509600-69515600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:69509600-69516400	Enhancers	HUVEC	blood vessel
32	chr14:69509800-69512000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr14:69509800-69512200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
34	chr14:69509800-69513200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:69509800-69513800	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr14:69509800-69513800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:69509800-69513800	Enhancers	Right Atrium	heart
38	chr14:69509800-69513800	Enhancers	Small Intestine	intestine
39	chr14:69509800-69513800	Enhancers	NHLF	lung
40	chr14:69509800-69514000	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr14:69509800-69514400	Enhancers	Colon Smooth Muscle	Colon
42	chr14:69509800-69514400	Enhancers	Left Ventricle	heart
43	chr14:69509800-69517400	Enhancers	Placenta	Placenta
44	chr14:69509800-69517800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr14:69509800-69519000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:69510000-69513200	Enhancers	Placenta Amnion	Placenta Amnion
47	chr14:69510000-69514000	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr14:69510000-69514000	Enhancers	Fetal Lung	lung
49	chr14:69510000-69514000	Enhancers	Fetal Stomach	stomach
50	chr14:69510000-69514400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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