Variant report

Variant	rs10498526
Chromosome Location	chr14:69523223-69523224
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69378230..69378923-chr14:69522827..69523707,3	MCF-7	breast:
2	chr14:69516593..69518334-chr14:69522409..69523949,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10129883	1.00[MEX][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes]
rs10134594	1.00[MEX][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs10134889	1.00[AMR][1000 genomes]
rs10145145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146434	0.85[AMR][1000 genomes]
rs10150736	0.85[AMR][1000 genomes]
rs12323321	0.85[AMR][1000 genomes]
rs28710350	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2877524	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs28799989	0.89[AFR][1000 genomes]
rs57723249	0.85[AMR][1000 genomes]
rs61160887	1.00[AMR][1000 genomes]
rs7144307	0.92[YRI][hapmap]
rs7145079	1.00[MEX][hapmap]
rs74059868	0.85[AMR][1000 genomes]
rs74059870	0.85[AMR][1000 genomes]
rs908484	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs9323526	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69516200-69541800	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69517600-69528000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:69518000-69533800	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
5	chr14:69518800-69529200	Strong transcription	Fetal Brain Female	brain
6	chr14:69518800-69529200	Strong transcription	Fetal Stomach	stomach
7	chr14:69518800-69530000	Strong transcription	Duodenum Mucosa	Duodenum
8	chr14:69518800-69530200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr14:69518800-69537000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr14:69519000-69524200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:69519000-69524400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:69519000-69524800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr14:69519000-69525000	Strong transcription	Dnd41	blood
14	chr14:69519000-69537000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:69519000-69537200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:69519200-69523800	Strong transcription	Thymus	Thymus
17	chr14:69519200-69528600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:69519200-69531000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:69519200-69531600	Strong transcription	Fetal Thymus	thymus
20	chr14:69519200-69544600	Weak transcription	Stomach Mucosa	stomach
21	chr14:69519400-69524800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:69519400-69525200	Strong transcription	GM12878-XiMat	blood
23	chr14:69519400-69534200	Strong transcription	Primary B cells from cord blood	blood
24	chr14:69519600-69523600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr14:69519600-69524800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:69519600-69524800	Strong transcription	HepG2	liver
27	chr14:69519600-69525000	Strong transcription	Fetal Lung	lung
28	chr14:69519600-69530800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr14:69519600-69546000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:69519800-69526200	Weak transcription	Psoas Muscle	Psoas
31	chr14:69519800-69531000	Strong transcription	Fetal Intestine Large	intestine
32	chr14:69519800-69531600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr14:69520000-69524800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr14:69520000-69525000	Strong transcription	Liver	Liver
35	chr14:69520000-69534800	Strong transcription	Placenta	Placenta
36	chr14:69520200-69523600	Strong transcription	Fetal Intestine Small	intestine
37	chr14:69520200-69524400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr14:69520200-69524800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr14:69520200-69525000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr14:69520200-69531600	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:69520200-69531800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:69520200-69532200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:69520400-69523800	Weak transcription	Fetal Brain Male	brain
44	chr14:69520400-69524400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr14:69520600-69525000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:69521000-69523600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:69521000-69540600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:69521400-69523400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr14:69521400-69524800	Genic enhancers	Osteobl	bone
50	chr14:69521400-69526600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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