Variant report

Variant	rs61160887
Chromosome Location	chr14:69525144-69525145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69524611..69527139-chr14:69538352..69541318,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10129883	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10134594	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135187	0.86[AFR][1000 genomes]
rs10138499	0.93[AFR][1000 genomes]
rs10143517	0.82[AFR][1000 genomes]
rs10145145	1.00[AMR][1000 genomes]
rs10146434	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10150736	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10498526	1.00[AMR][1000 genomes]
rs12323321	0.85[AMR][1000 genomes]
rs28710350	1.00[AMR][1000 genomes]
rs57084924	0.87[AFR][1000 genomes]
rs57723249	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74059868	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74059870	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs908484	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69516200-69541800	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69517600-69528000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:69518000-69533800	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
5	chr14:69518800-69529200	Strong transcription	Fetal Brain Female	brain
6	chr14:69518800-69529200	Strong transcription	Fetal Stomach	stomach
7	chr14:69518800-69530000	Strong transcription	Duodenum Mucosa	Duodenum
8	chr14:69518800-69530200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr14:69518800-69537000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr14:69519000-69537000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:69519000-69537200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr14:69519200-69528600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:69519200-69531000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr14:69519200-69531600	Strong transcription	Fetal Thymus	thymus
15	chr14:69519200-69544600	Weak transcription	Stomach Mucosa	stomach
16	chr14:69519400-69525200	Strong transcription	GM12878-XiMat	blood
17	chr14:69519400-69534200	Strong transcription	Primary B cells from cord blood	blood
18	chr14:69519600-69530800	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr14:69519600-69546000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:69519800-69526200	Weak transcription	Psoas Muscle	Psoas
21	chr14:69519800-69531000	Strong transcription	Fetal Intestine Large	intestine
22	chr14:69519800-69531600	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr14:69520000-69534800	Strong transcription	Placenta	Placenta
24	chr14:69520200-69531600	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:69520200-69531800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:69520200-69532200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:69521000-69540600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:69521400-69526600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr14:69521400-69530200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:69521800-69528400	Weak transcription	Small Intestine	intestine
31	chr14:69522000-69528000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr14:69522200-69525400	Weak transcription	Gastric	stomach
33	chr14:69522200-69528000	Weak transcription	Brain Substantia Nigra	brain
34	chr14:69522200-69528400	Weak transcription	Colonic Mucosa	Colon
35	chr14:69522200-69539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:69522400-69525800	Weak transcription	Lung	lung
37	chr14:69522400-69526000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:69522400-69526200	Weak transcription	NHLF	lung
39	chr14:69522400-69528000	Weak transcription	Fetal Kidney	kidney
40	chr14:69522400-69556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:69522400-69564800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr14:69522600-69526000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr14:69522600-69526000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr14:69522600-69526200	Weak transcription	Spleen	Spleen
45	chr14:69522600-69526200	Weak transcription	A549	lung
46	chr14:69522600-69526200	Weak transcription	HMEC	breast
47	chr14:69522600-69527000	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr14:69522600-69545600	Weak transcription	Pancreas	Pancrea
49	chr14:69522800-69526000	Weak transcription	Esophagus	oesophagus
50	chr14:69523200-69527800	Weak transcription	K562	blood

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