Variant report

Variant	rs10134889
Chromosome Location	chr14:69522409-69522410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69441719..69443220-chr14:69520758..69522938,2	MCF-7	breast:
2	chr14:69516593..69518334-chr14:69522409..69523949,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10129883	0.86[ASW][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10134594	0.86[ASW][hapmap];0.82[LWK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135187	0.83[AFR][1000 genomes]
rs10138499	0.91[AFR][1000 genomes]
rs10145145	1.00[AMR][1000 genomes]
rs10146434	0.85[AMR][1000 genomes]
rs10150736	0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10498526	1.00[AMR][1000 genomes]
rs12323321	0.85[AMR][1000 genomes]
rs28710350	1.00[AMR][1000 genomes]
rs57084924	0.85[AFR][1000 genomes]
rs57723249	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61160887	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74059868	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74059870	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs908484	0.86[ASW][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69516200-69541800	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69517000-69523200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:69517600-69528000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:69518000-69533800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr14:69518200-69523000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
7	chr14:69518800-69529200	Strong transcription	Fetal Brain Female	brain
8	chr14:69518800-69529200	Strong transcription	Fetal Stomach	stomach
9	chr14:69518800-69530000	Strong transcription	Duodenum Mucosa	Duodenum
10	chr14:69518800-69530200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr14:69518800-69537000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr14:69519000-69522800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:69519000-69522800	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr14:69519000-69524200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:69519000-69524400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:69519000-69524800	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr14:69519000-69525000	Strong transcription	Dnd41	blood
18	chr14:69519000-69537000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr14:69519000-69537200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:69519200-69522800	Strong transcription	Fetal Muscle Leg	muscle
21	chr14:69519200-69523000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:69519200-69523000	Strong transcription	NHEK	skin
23	chr14:69519200-69523800	Strong transcription	Thymus	Thymus
24	chr14:69519200-69528600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:69519200-69531000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:69519200-69531600	Strong transcription	Fetal Thymus	thymus
27	chr14:69519200-69544600	Weak transcription	Stomach Mucosa	stomach
28	chr14:69519400-69522800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:69519400-69522800	Strong transcription	Esophagus	oesophagus
30	chr14:69519400-69524800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr14:69519400-69525200	Strong transcription	GM12878-XiMat	blood
32	chr14:69519400-69534200	Strong transcription	Primary B cells from cord blood	blood
33	chr14:69519600-69522600	Strong transcription	HMEC	breast
34	chr14:69519600-69523600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr14:69519600-69524800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:69519600-69524800	Strong transcription	HepG2	liver
37	chr14:69519600-69525000	Strong transcription	Fetal Lung	lung
38	chr14:69519600-69530800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr14:69519600-69546000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr14:69519800-69522600	Strong transcription	Pancreas	Pancrea
41	chr14:69519800-69523000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:69519800-69523200	Strong transcription	Brain Germinal Matrix	brain
43	chr14:69519800-69526200	Weak transcription	Psoas Muscle	Psoas
44	chr14:69519800-69531000	Strong transcription	Fetal Intestine Large	intestine
45	chr14:69519800-69531600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr14:69520000-69522600	Strong transcription	Brain Cingulate Gyrus	brain
47	chr14:69520000-69522600	Strong transcription	Spleen	Spleen
48	chr14:69520000-69522800	Strong transcription	Adipose Nuclei	Adipose
49	chr14:69520000-69523200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:69520000-69523200	Genic enhancers	Right Ventricle	heart

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